Browse Element(s) Details


Os.13081.1.S1_at

Description gb:AK111031.1
DB_XREF= gi:32996240
TID=Os.13081.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131G08.13 (B1131G08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-H09, full insert sequence.
FL= gb:AK111031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5542011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55390Os.54725.1.S1_at10/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55390Os.32752.2.S1_s_at1/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55400Os.10191.1.S1_at11/111+32243445..32245112hypothetical protein
LOC_Os01g55400OsAffx.23800.1.S1_at9/111+32243445..32245112hypothetical protein
LOC_Os01g55410Os.35371.1.S1_at11/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_x_at8/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_at5/111+32246342..32249175expressed protein
LOC_Os01g55420Os.13081.1.S1_at11/111+32252714..32253782expressed protein
LOC_Os01g55430Os.31726.1.S1_at11/111+32253984..32256853Tub family protein, expressed
LOC_Os01g55440Os.12657.1.S1_at11/111+32265336..32267032Protein kinase domain containing protein, expressed
LOC_Os01g55450Os.32856.1.S1_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55450Os.32856.1.S2_at11/111+32270377..32275428protein kinase PK4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13081.1.S1_at--775--4551Chr01:32253165..32253189 (25 bp)
GCGCCTTCTTCGGTGAGCACGTCGA
LOC_Os01g55420
Os.13081.1.S1_at--741--2971Chr01:32253233..32253257 (25 bp)
AATGTGGCCCGGTTCTTCCAGGAGC
LOC_Os01g55420
Os.13081.1.S1_at--638--1451Chr01:32253306..32253330 (25 bp)
AGAAGGGCCGGTTCCTGTGCCTCGT
LOC_Os01g55420
Os.13081.1.S1_at--842--8091Chr01:32253483..32253587 (25 bp)
GGACCACGGCTTTGCAGACGGATTC
LOC_Os01g55420
Os.13081.1.S1_at--937--3411Chr01:32253577..32253601 (25 bp)
CAGACGGATTCTGACAATGCTGGCA
LOC_Os01g55420
Os.13081.1.S1_at--1129--2791Chr01:32253611..32253635 (25 bp)
AAGATATTCACTGCGAGGATGTTCC
LOC_Os01g55420
Os.13081.1.S1_at--95--7271Chr01:32253659..32253683 (25 bp)
GTCCTCATCAGTGATCGGTGTACAA
LOC_Os01g55420
Os.13081.1.S1_at--1064--10451Chr01:32253700..32253724 (25 bp)
TTAACAGCTAATTTCCCTCCGGAAG
LOC_Os01g55420
Os.13081.1.S1_at--1037--2771Chr01:32253722..32253746 (25 bp)
AAGAGAGTCGTCTTTTGTTCAGAAA
LOC_Os01g55420
Os.13081.1.S1_at--307--2351Chr01:32253744..32253768 (25 bp)
AAAGCTTTGCTAATCTGAAGGTCGT
LOC_Os01g55420
Os.13081.1.S1_at--894--9471Chr01:32253757..32253781 (25 bp)
TCTGAAGGTCGTTTTTCTTTTGTCA
LOC_Os01g55420
Target Sequence 
GCGCCTTCTTCGGTGAGCACGTCGACCACGACGACGGCGACGACGAGGATGAGGAAGAGGAGGAAGGCAATGTGGCCCGG
TTCTTCCAGGAGCTNCTGGAGAAGGACGCGGGCCTGAGGGGGTTCTACGAGGCGGAGCGGGAGAAGGGCCGGTTCCTGTG
CCTCGTGTGCGAGGGGATCGGCGCCAGGGCGGGCAAGAGGTTCGCCGGCTGCGCGGCGCTCGTGCAGCACGCCGGATCGG
TCGCCCGGGCCGGGAGGAGGATGGCGCACCGGGCGTTCGCGGACGCCGTCGGCCGGCTGCTGGGCTGGAGCGCNGGCCGG
ACCACGGCTTTGCAGACGGATTCTGACAATGCTGGCATGTGCGATGAAGATATTCACTGCGAGGATGTTCCGCAAAGCGC
AGAAATGGAGATGTGTCCTCATCAGTGATCGGTGTACAAGGACCCAGTAGCCTNTTTAACAGCTAATTTCCCTCCGGAAG
AGAGTCGTCTTTTGTTCAGAAAGCTTTGCTAATCTGAAGGTCGTTTTTCTTTTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis