Browse Element(s) Details


Os.35371.1.S1_at

Description gb:AK067793.1
DB_XREF= gi:32977811
TID=Os.35371.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131G08.12 (B1131G08.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114H14, full insert sequence.
FL= gb:AK067793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5541011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55390Os.54725.1.S1_at10/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55390Os.32752.2.S1_s_at1/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55400Os.10191.1.S1_at11/111+32243445..32245112hypothetical protein
LOC_Os01g55400OsAffx.23800.1.S1_at9/111+32243445..32245112hypothetical protein
LOC_Os01g55410Os.35371.1.S1_at11/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_x_at8/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_at5/111+32246342..32249175expressed protein
LOC_Os01g55420Os.13081.1.S1_at11/111+32252714..32253782expressed protein
LOC_Os01g55430Os.31726.1.S1_at11/111+32253984..32256853Tub family protein, expressed
LOC_Os01g55440Os.12657.1.S1_at11/111+32265336..32267032Protein kinase domain containing protein, expressed
LOC_Os01g55450Os.32856.1.S1_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55450Os.32856.1.S2_at11/111+32270377..32275428protein kinase PK4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35371.1.S1_at--590--3371Chr01:32248542..32248566 (25 bp)
CACCAGTGCCATCTTTTCTTGGAAT
LOC_Os01g55410
Os.35371.1.S1_at--684--9351Chr01:32248577..32248601 (25 bp)
TCGAAGAAACAAACTCCCTGGGCCT
LOC_Os01g55410
Os.35371.1.S1_at--509--2751Chr01:32248621..32248645 (25 bp)
TAATGTTAAACCTCCTAGGCCACGA
LOC_Os01g55410
Os.35371.1.S1_at--521--9571Chr01:32248791..32248815 (25 bp)
TCTTCCCTCAAGACCAATATCTGTT
LOC_Os01g55410
Os.35371.1.S1_at--955--8991Chr01:32248826..32248850 (25 bp)
TGAAGGACAGCACGGCCATGTATCT
LOC_Os01g55410
Os.35371.1.S1_at--132--10291Chr01:32248887..32248911 (25 bp)
TTTGCTGTCGCAATCTTGGCTATTA
LOC_Os01g55410
Os.35371.1.S1_at--759--10011Chr01:32248910..32248934 (25 bp)
TAGCAGCTTTTTTGTATACCAGTAC
LOC_Os01g55410
Os.35371.1.S1_at--187--1031Chr01:32248937..32248961 (25 bp)
AGGTAATTGTCGTTGTGCATGCCAT
LOC_Os01g55410
Os.35371.1.S1_at--705--3531Chr01:32248954..32248978 (25 bp)
CATGCCATATTTGCGTACTCTGTGA
LOC_Os01g55410
Os.35371.1.S1_at--522--6611Chr01:32248990..32249014 (25 bp)
GTTGGCGTTGGCTTAAATCTGTTGT
LOC_Os01g55410
Os.35371.1.S1_at--838--6851Chr01:32249044..32249068 (25 bp)
GTTTGCTTCCTTACAGTCCATACAT
LOC_Os01g55410
Target Sequence 
CACCAGTGCCATCTTTTCTTGGAATTCAATTGCAGTCGAAGAAACAAACTCCCTGGGCCTCAATTCAGCCAAAGGAGAAT
AATGTTAAACCTCCTAGGCCACGACAGATAAGATTTGCAGATGTGGTAGAAAGGCCTAATTCATTGGATGCTGAGATATG
ATGTCTTCCCTCAAGACCAATATCTGTTCATAATGCCTTGAAGGACAGCACGGCCATGTATCTGCCAGCGCCCAAATTTT
CCCTGGATGCCCCCCTCAGTTTGCTGTCGCAATCTTGGCTATTAGCAGCTTTTTTGTATACCAGTACATAGGTAATTGTC
GTTGTGCATGCCATATTTGCGTACTCTGTGAACTCAAGGTAAGTTGGCGTTGGCTTAAATCTGTTGTAAATCACATATCT
ATACAGCATAGCTTCTGTTTGCTTCCTTACAGTCCATACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis