Browse Element(s) Details


OsAffx.23800.1.S1_at

Description tigr:9629.m05409
TID=OsAffx.23800.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g554009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55380OsAffx.23799.1.S1_at11/111+32219030..32219463hypothetical protein
LOC_Os01g55390Os.54725.1.S1_at10/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55390Os.32752.2.S1_s_at1/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55400Os.10191.1.S1_at11/111+32243445..32245112hypothetical protein
LOC_Os01g55400OsAffx.23800.1.S1_at9/111+32243445..32245112hypothetical protein
LOC_Os01g55410Os.35371.1.S1_at11/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_x_at8/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_at5/111+32246342..32249175expressed protein
LOC_Os01g55420Os.13081.1.S1_at11/111+32252714..32253782expressed protein
LOC_Os01g55430Os.31726.1.S1_at11/111+32253984..32256853Tub family protein, expressed
LOC_Os01g55440Os.12657.1.S1_at11/111+32265336..32267032Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23800.1.S1_at--1141--1171NONE
AGTAGCACGGTGTCTGGCCCTGGAC
NONE
OsAffx.23800.1.S1_at--589--8411Chr01:32244049..32244073 (25 bp)
GGCCCTGGACGCACATGGTGATATA
LOC_Os01g55400
OsAffx.23800.1.S1_at--1112--1091Chr01:32244015..32244039 (25 bp)
AGTGGTGATGAGTTACCGCGTCAGT
LOC_Os01g55400
OsAffx.23800.1.S1_at--925--8891Chr01:32244007..32244031 (25 bp)
TGAGTTACCGCGTCAGTGTGAGGAA
LOC_Os01g55400
OsAffx.23800.1.S1_at--1116--1191NONE
AGTATTGACATGGACTGTCCGCCGC
NONE
OsAffx.23800.1.S1_at--209--5731Chr01:32243621..32243645 (25 bp)
GACTGTCCGCCGCATCAGGAAAATG
LOC_Os01g55400
OsAffx.23800.1.S1_at--902--4511Chr01:32243613..32243637 (25 bp)
GCCGCATCAGGAAAATGGCTGTCAT
LOC_Os01g55400
OsAffx.23800.1.S1_at--209--8491Chr01:32243598..32243622 (25 bp)
TGGCTGTCATGGCACTGTTTCTAAC
LOC_Os01g55400
OsAffx.23800.1.S1_at--1059--8471Chr01:32243589..32243613 (25 bp)
TGGCACTGTTTCTAACCTACAACGG
LOC_Os01g55400
OsAffx.23800.1.S1_at--462--9851Chr01:32243572..32243596 (25 bp)
TACAACGGCCTAACTATACGCTGGT
LOC_Os01g55400
OsAffx.23800.1.S1_at--569--2531Chr01:32243475..32243585 (25 bp)
AACTATACGCTGGTCACTTCAGAGC
LOC_Os01g55400
Target Sequence 
AGTAGCACGGTGTCTGGCCCTGGACGCACATGGTGATATATTCTATGATAGTGGTGATGAGTTACCGCGTCAGTGTGAGG
AAGAAACAGTATTGACATGGACTGTCCGCCGCATCAGGAAAATGGCTGTCATGGCACTGTTTCTAACCTACAACGGCCTA
ACTATACGCTGGTCACTTCAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis