Browse Element(s) Details


OsAffx.23799.1.S1_at

Description tigr:9629.m05407
TID=OsAffx.23799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5538011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55360Os.15356.1.S1_at11/111+32197783..32204455Phosphatidate cytidylyltransferase, putative, expressed
LOC_Os01g55370Os.31586.1.S1_at11/111+32216559..32218069expressed protein
LOC_Os01g55370Os.31586.2.S1_x_at11/111+32216559..32218069expressed protein
LOC_Os01g55380OsAffx.23799.1.S1_at11/111+32219030..32219463hypothetical protein
LOC_Os01g55390Os.54725.1.S1_at10/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55390Os.32752.2.S1_s_at1/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55400Os.10191.1.S1_at11/111+32243445..32245112hypothetical protein
LOC_Os01g55400OsAffx.23800.1.S1_at9/111+32243445..32245112hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23799.1.S1_at--585--3191Chr01:32219062..32219274 (25 bp)
CAAGGAAAGGATGACCTCCTTCGGT
LOC_Os01g55380
OsAffx.23799.1.S1_at--353--8911Chr01:32219261..32219285 (25 bp)
TGACCTCCTTCGGTCGTTATCCCTA
LOC_Os01g55380
OsAffx.23799.1.S1_at--20--9231Chr01:32219274..32219367 (25 bp)
TCGTTATCCCTACAAAAAGGAACAT
LOC_Os01g55380
OsAffx.23799.1.S1_at--540--2311Chr01:32219359..32219382 (24 bp)
AAAGGAACATGTACCGGTCATTTTG
LOC_Os01g55380
OsAffx.23799.1.S1_at--440--5491Chr01:32219362..32219386 (25 bp)
GAACATGTACCGGTCATTTTGGATA
LOC_Os01g55380
OsAffx.23799.1.S1_at--782--3431Chr01:32219365..32219389 (25 bp)
CATGTACCGGTCATTTTGGATAGTA
LOC_Os01g55380
OsAffx.23799.1.S1_at--1134--1771Chr01:32219370..32219394 (25 bp)
ACCGGTCATTTTGGATAGTATATTT
LOC_Os01g55380
OsAffx.23799.1.S1_at--582--7951Chr01:32219382..32219406 (25 bp)
GGATAGTATATTTCAATCTGAACTC
LOC_Os01g55380
OsAffx.23799.1.S1_at--915--6871Chr01:32219387..32219411 (25 bp)
GTATATTTCAATCTGAACTCAACAA
LOC_Os01g55380
OsAffx.23799.1.S1_at--1096--5451Chr01:32219401..32219425 (25 bp)
GAACTCAACAAGATGCATAAAGCTG
LOC_Os01g55380
OsAffx.23799.1.S1_at--5--2471Chr01:32219407..32219431 (25 bp)
AACAAGATGCATAAAGCTGTTCCAA
LOC_Os01g55380
Target Sequence 
CAAGGAAAGGATGACCTCCTTCGGTCGTTATCCCTACAAAAAGGAACATGTACCGGTCATTTTGGATAGTATATTTCAAT
CTGAACTCAACAAGATGCATAAAGCTGTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis