Browse Element(s) Details


Os.22408.1.S1_at

Description gb:AK107959.1
DB_XREF= gi:32993168
TID=Os.22408.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22408 (NCBI UniGene Cluster)
UG_TITLE=MRNA for RA39p, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C07, full insert sequence.
FL= gb:AK107959.1 gb:AB053261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3709011/11Ribosome inactivating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37050NANA7+22198721..22200436hypothetical protein
LOC_Os07g37060OsAffx.5557.1.S1_at11/117+22201299..22201943expressed protein
LOC_Os07g37070NANA7+22203895..22204634hypothetical protein
LOC_Os07g37080OsAffx.16592.1.S1_at11/117+22209596..22211455F-box domain containing protein
LOC_Os07g37090Os.22408.1.S1_at11/117+22220606..22221642Ribosome inactivating protein, expressed
LOC_Os07g37100Os.8375.1.S1_at11/117+22229333..22232900equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37110Os.53971.1.S1_at11/117+22235127..22238625equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37120NANA7+22240025..22241838retrotransposon protein, putative, LINE subclass
LOC_Os07g37130Os.52135.1.S1_at11/117+22242231..22244796equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37140Os.9008.1.S1_at11/117+22245963..22251138expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22408.1.S1_at--903--8551Chr07:22221125..22221149 (25 bp)
TGGAGTGGACTACGCATCGATCGCC
LOC_Os07g37090
Os.22408.1.S1_at--760--9951Chr07:22221076..22221100 (25 bp)
TACCCTCTCGGTAGGCGTCAAACGG
LOC_Os07g37090
Os.22408.1.S1_at--1063--2571Chr07:22220991..22221015 (25 bp)
AACGTGCGGTAGTGATCATCCTTCT
LOC_Os07g37090
Os.22408.1.S1_at--443--4111Chr07:22220957..22220981 (25 bp)
CGAAGCTCTCAGGTTCTTTCCTATA
LOC_Os07g37090
Os.22408.1.S1_at--808--5491Chr07:22220920..22220944 (25 bp)
GAAATAGGTTGGGACTCCGTTGCCT
LOC_Os07g37090
Os.22408.1.S1_at--163--9891Chr07:22220896..22220920 (25 bp)
TACATTACCTCAACCGATGCGGATC
LOC_Os07g37090
Os.22408.1.S1_at--778--6811Chr07:22220829..22220853 (25 bp)
GTTTTATGTCCGGTCATTCATGGGA
LOC_Os07g37090
Os.22408.1.S1_at--1160--8151Chr07:22220798..22220822 (25 bp)
GGAACAACGTACTCGCCTCAAGAAT
LOC_Os07g37090
Os.22408.1.S1_at--82--5411Chr07:22220746..22220770 (25 bp)
GAACCTCAGGCACTTGAAACCGTTG
LOC_Os07g37090
Os.22408.1.S1_at--716--6071Chr07:22220713..22220737 (25 bp)
GAGTACGGAGCTATCTTAGGTGCTA
LOC_Os07g37090
Os.22408.1.S1_at--778--3711Chr07:22220645..22220669 (25 bp)
CTAGCTAATATAGGCGCACTTCCAC
LOC_Os07g37090
Target Sequence 
TGGAGTGGACTACGCATCGATCGCCGGCTTCCGGAAAAACCTTCCAAACTACCCTCTCGGTAGGCGTCAAACGGAGTGGG
CGGTAAAAGTTCTTTCAGAATACGATCCAAATCGCACTGATGAAGCAACCATAAAACGTGCGGTAGTGATCATCCTTCTT
ACCTTCTGCGAAGCTCTCAGGTTCTTTCCTATAAGAAATGCGGTTGAAATAGGTTGGGACTCCGTTGCCTACATTACCTC
AACCGATGCGGATCGTCTCGTATGTTGGGGACAAATCTCATATATGCTTGAATATAGTTTTATGTCCGGTCATTCATGGG
ACTCGGAGGAACAACGTACTCGCCTCAAGAATCTAGCACGAGATTGTAAAATCTTTAACGAACCTCAGGCACTTGAAACC
GTTGATGTGTTAGAGTACGGAGCTATCTTAGGTGCTAAAAGTACAAATTGGTTGTATTAATGCAAGGTGTAAGCNCCCTC
CTAGCTAATATAGGCGCACTTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis