Browse Element(s) Details


Os.2248.1.S1_at

Description gb:AF093631.1
DB_XREF= gi:3885885
GEN=RISP
TID=Os.2248.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.2248 (NCBI UniGene Cluster)
DEF=Oryza sativa Rieske Fe-S precursor protein (RISP) mRNA, complete cds.
PROD=Rieske Fe-S precursor protein
FL= gb:AK071634.1 gb:AF093631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3703011/11Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36990OsAffx.19542.3.S1_x_at7/117+22159437..22164971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g36990OsAffx.9949.1.S1_at1/117+22159437..22164971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g37000OsAffx.28789.1.S1_at11/117+22167230..22167607hypothetical protein
LOC_Os07g37010Os.50582.1.S1_at11/117+22167828..22170029Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g37020OsAffx.5556.1.S1_at11/117+22181189..22182168hypothetical protein
LOC_Os07g37030Os.2248.1.S1_at11/117+22182713..22185239Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed
LOC_Os07g37040Os.13496.1.S1_at11/117+22185662..22187362PB1 domain containing protein, expressed
LOC_Os07g37050NANA7+22198721..22200436hypothetical protein
LOC_Os07g37060OsAffx.5557.1.S1_at11/117+22201299..22201943expressed protein
LOC_Os07g37070NANA7+22203895..22204634hypothetical protein
LOC_Os07g37080OsAffx.16592.1.S1_at11/117+22209596..22211455F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009775biological_processphotosynthetic electron transport in cytochrome b6/f
GO:0010196biological_processnonphotochemical quenching
GO:0009512cellular_componentcytochrome b6f complex
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0046028molecular_functionelectron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2248.1.S1_at--382--991Chr07:22184215..22184239 (25 bp)
AGGAGTGGCTCAAGACACACGGCCC
LOC_Os07g37030
Os.2248.1.S1_at--621--2751Chr07:22184392..22184416 (25 bp)
AAGACGCTGGCCACGTACGGGATCA
LOC_Os07g37030
Os.2248.1.S1_at--805--1891Chr07:22184404..22184428 (25 bp)
ACGTACGGGATCAACGCCGTGTGCA
LOC_Os07g37030
Os.2248.1.S1_at--1100--2451Chr07:22184503..22184527 (25 bp)
AACAACCAGGGCAGGGTCGTCCGTG
LOC_Os07g37030
Os.2248.1.S1_at--89--8552Chr07:22184802..22184826 (25 bp)
TGGAGACCGACTTCAGGACCGGCGA
LOC_Os07g37030
Os.2248.1.S1_at--927--4173Chr07:22184830..22184854 (25 bp)
CCCGTGGTGGGCGTAAGCTATAACA
LOC_Os07g37030
Os.2248.1.S1_at--1063--1211Chr07:22184883..22184907 (25 bp)
AGTTCACTTGTGTGATCAGCTTGTA
LOC_Os07g37030
Os.2248.1.S1_at--90--6972Chr07:22184905..22184929 (25 bp)
GTAGCTATAAGTCCGCTGTATCTGA
LOC_Os07g37030
Os.2248.1.S1_at--904--5971Chr07:22184928..22184952 (25 bp)
GAGAAACGCTGCTGTAAATCCATCT
LOC_Os07g37030
Os.2248.1.S1_at--525--571Chr07:22184945..22184969 (25 bp)
ATCCATCTTCACTTTGTTTTTCCAA
LOC_Os07g37030
Os.2248.1.S1_at--1016--2771Chr07:22185002..22185026 (25 bp)
AAGAGCATAAAACCCTTTTCACTGC
LOC_Os07g37030
Target Sequence 
AGGAGTGGCTCAAGACACACGGCCCCAACGACCGCACCCTCACCCAGGGGCTCAAGGGTGACCCGACGTACCTCGTCGTG
GAGGCCGACAAGACGCTGGCCACGTACGGGATCAACGCCGTGTGCACGCACCTTGGGTGCGTCGTGCCGTGGAACGCCGC
CGAGAACAAGTTCATCTGCCCCTGCCACGGCTCGCAGTACAACAACCAGGGCAGGGTCGTCCGTGGACCTGCTCCCCTGT
CGCTGGCATTGGTGCACGCCGACGTCGACGACGGCAAGGTTCTCTTCGTGCCGTGGGTGGAGACCGACTTCAGGACCGGC
GACAACCCGTGGTGGGCGTAAGCTATAACAACATGATCCATATCATCATCAGCAGCAAAGTTCACTTGTGTGATCAGCTT
GTAGCTATAAGTCCGCTGTATCTGAGAAACGCTGCTGTAAATCCATCTTCACTTTGTTTTTCCAAATTATATGTACACAC
ACTGTCACACGTGTATGAAAGAGCATAAAACCCTTTTCACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis