Browse Element(s) Details


OsAffx.5556.1.S1_at

Description tigr:9635.m03666
TID=OsAffx.5556.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3702011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36990OsAffx.19542.3.S1_x_at7/117+22159437..22164971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g36990OsAffx.9949.1.S1_at1/117+22159437..22164971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g37000OsAffx.28789.1.S1_at11/117+22167230..22167607hypothetical protein
LOC_Os07g37010Os.50582.1.S1_at11/117+22167828..22170029Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g37020OsAffx.5556.1.S1_at11/117+22181189..22182168hypothetical protein
LOC_Os07g37030Os.2248.1.S1_at11/117+22182713..22185239Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed
LOC_Os07g37040Os.13496.1.S1_at11/117+22185662..22187362PB1 domain containing protein, expressed
LOC_Os07g37050NANA7+22198721..22200436hypothetical protein
LOC_Os07g37060OsAffx.5557.1.S1_at11/117+22201299..22201943expressed protein
LOC_Os07g37070NANA7+22203895..22204634hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5556.1.S1_at--1129--10571Chr07:22181969..22181993 (25 bp)
TTCTCATTCCCGTCGATGATGTCGT
LOC_Os07g37020
OsAffx.5556.1.S1_at--242--9531Chr07:22181970..22181994 (25 bp)
TCTCATTCCCGTCGATGATGTCGTC
LOC_Os07g37020
OsAffx.5556.1.S1_at--436--4451Chr07:22182041..22182065 (25 bp)
GCCTACGAGCGGATCTGCCATGTGG
LOC_Os07g37020
OsAffx.5556.1.S1_at--789--9931Chr07:22182044..22182068 (25 bp)
TACGAGCGGATCTGCCATGTGGCGC
LOC_Os07g37020
OsAffx.5556.1.S1_at--119--1631Chr07:22182048..22182072 (25 bp)
AGCGGATCTGCCATGTGGCGCCTAT
LOC_Os07g37020
OsAffx.5556.1.S1_at--670--6411Chr07:22182052..22182076 (25 bp)
GATCTGCCATGTGGCGCCTATGGAA
LOC_Os07g37020
OsAffx.5556.1.S1_at--393--7551Chr07:22182062..22182086 (25 bp)
GTGGCGCCTATGGAAAGGAGCACCA
LOC_Os07g37020
OsAffx.5556.1.S1_at--982--4551Chr07:22182065..22182089 (25 bp)
GCGCCTATGGAAAGGAGCACCATGC
LOC_Os07g37020
OsAffx.5556.1.S1_at--578--8071Chr07:22182078..22182102 (25 bp)
GGAGCACCATGCAGCGGCCGGAAGG
LOC_Os07g37020
OsAffx.5556.1.S1_at--610--971Chr07:22182107..22182131 (25 bp)
AGGAGCAGCGTCTCCTATATGCTGC
LOC_Os07g37020
OsAffx.5556.1.S1_at--295--5071Chr07:22182111..22182135 (25 bp)
GCAGCGTCTCCTATATGCTGCCTCG
LOC_Os07g37020
Target Sequence 
TTCTCATTCCCGTCGATGATGTCGTCGCCGCTGTTGGCCTCCCCGCCCCCTTGCCAACCTCGCCGAGGGAAGGCCTACGA
GCGGATCTGCCATGTGGCGCCTATGGAAAGGAGCACCATGCAGCGGCCGGAAGGGGAGAGGAGCAGCGTCTCCTATATGC
TGCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis