Browse Element(s) Details


Os.22487.1.S1_at

Description gb:AK067996.1
DB_XREF= gi:32978014
TID=Os.22487.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127D21, full insert sequence.
FL= gb:AK067996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1419411/11Lactoylglutathione lyase, putative, expressed
LOC_Os04g268501/11Importin-beta N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14170Os.18769.1.S1_at11/115+7906427..7915722PQQ enzyme repeat-containing protein, putative, expressed
LOC_Os05g14180Os.11876.1.S1_s_at11/115+7930186..7933694Auxin-responsive protein IAA9, putative, expressed
LOC_Os05g14194Os.22487.1.S1_at11/115+7939353..7946068Lactoylglutathione lyase, putative, expressed
LOC_Os05g14194OsAffx.4331.1.S1_at10/115+7939353..7946068Lactoylglutathione lyase, putative, expressed
LOC_Os05g14210OsAffx.14684.1.S1_at11/115+7947180..7947746hypothetical protein
LOC_Os05g14220OsAffx.26878.1.S1_at11/115+7952449..7955131Protein kinase domain containing protein
LOC_Os05g14220Os.4820.1.S1_at1/115+7952449..7955131Protein kinase domain containing protein
LOC_Os05g14230NANA5+7960254..7960508hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005975biological_processcarbohydrate metabolism
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0004462molecular_functionlactoylglutathione lyase activity
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22487.1.S1_at--153--2171Chr05:7939923..7939947 (25 bp)
ACACCACCTCGAACTGAGGTTTGTA
LOC_Os05g14194
Os.22487.1.S1_at--743--10091Chr05:7939896..7939920 (25 bp)
TAGGCCATGCAAATCTACCATTCCA
LOC_Os05g14194
Os.22487.1.S1_at--1084--131Chr05:7939850..7939874 (25 bp)
ATTAGATTACAACATTCCAAGCGAT
LOC_Os05g14194
Os.22487.1.S1_at--122--2671Chr05:7939832..7939856 (25 bp)
AAGCGATGTAGATGCGCAATCCATT
LOC_Os05g14194
Os.22487.1.S1_at--669--4931Chr05:7939817..7939841 (25 bp)
GCAATCCATTTTGTTAGCGAAGTCA
LOC_Os05g14194
Os.22487.1.S1_at--598--91Chr05:7939716..7939740 (25 bp)
ATTCCTGCTGTAGGACTTCTTGTCA
LOC_Os05g14194
Os.22487.1.S1_at--370--8132Chr04:15681771..15681790 (20 bp)
GGACTTCTTGTCATTTGTATTCTAT
LOC_Os04g26850
Os.22487.1.S1_at--985--9551Chr05:7939605..7939629 (25 bp)
TCTTTTGTGCTTTATCCATGGGCGC
LOC_Os05g14194
Os.22487.1.S1_at--619--6571Chr05:7939455..7939479 (25 bp)
GATTCTATGAATACCAGCGTCAGTG
LOC_Os05g14194
Os.22487.1.S1_at--733--6071Chr05:7939424..7939448 (25 bp)
GAGTTTGACCTAGTTTTATTGACAA
LOC_Os05g14194
Os.22487.1.S1_at--970--2811Chr05:7939388..7939412 (25 bp)
AAGTTGTACTTTCATCCAGATTTGT
LOC_Os05g14194
Target Sequence 
ACACCACCTCGAACTGAGGTTTGTAGATAGGCCATGCAAATCTACCATTCCACAGTTGGTAGTTTAATAGAGCATTAGAT
TACAACATTCCAAGCGATGTAGATGCGCAATCCATTTTGTTAGCGAAGTCAAATCATATGTACAAATTTTGTTTTNCCGG
GTCAGAACTATTGTTCTTAATCAATCCATTTTACATTCGAAAGTTNGCATTCCTGCTGTAGGACTTCTTGTCATTTGTAT
TCTATGTCATGGAATATGAATGAATGGTGGTAAGTATGGAATCAGCGAGTGAGGAGCACAAACGCTGAGAACTGAAAAGT
CTTTTGTGCTTTATCCATGGGCGCCCTGGAANAAAGGAGAGAAAGGTTACATGNGATCTTTTACGTTGANANGGNGCCCA
TTTGACATGGAGCGAGATGGCGACAGNGTTCATCACTGTTAACATATGAAGGCATATTATATAGCAAAAGATTCTATGAA
TACCAGCGTCAGTGTAAGTTGAGTTTGACCTAGTTTTATTGACAATAATATTGGCAAAGTTGTACTTTCATCCAGATTTG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis