Browse Element(s) Details


Os.2249.1.S1_at

Description gb:AU108761
DB_XREF= gi:10794795
DB_XREF=AU108761
CLONE=C50938
TID=Os.2249.1
CNT=61
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.2249 (NCBI UniGene Cluster)
UG_TITLE=S-phase-specific ribosomal protein (RSPSP94) mRNA, complete cds
FL= gb:AK099131.1 gb:AF052503.1 gb:AK059647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1855011/1140S ribosomal protein S3a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18530OsAffx.12102.1.S1_at10/112+10800142..10802475hypothetical protein
LOC_Os02g18540OsAffx.24308.1.S1_s_at11/112+10803654..10812274Protein of unknown function, DUF614 containing protein, expressed
LOC_Os02g18550Os.2249.1.S1_at11/112+10822641..1082567040S ribosomal protein S3a, putative, expressed
LOC_Os02g18560NANA2+10827394..10831164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18570Os.46862.1.S1_at5/112+10831878..10833756retrotransposon protein, putative, unclassified
LOC_Os02g18580OsAffx.30582.1.S1_s_at10/112+10836766..10837275hypothetical protein
LOC_Os02g18590Os.55650.1.A1_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22385.1.S1_x_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.21756.5.A1_x_at5/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.52979.1.S1_at4/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.20329.1.S1_at2/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.22646.1.S1_x_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22143.1.S1_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18600OsAffx.11549.1.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18600OsAffx.31811.4.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18610OsAffx.12103.1.S1_at11/112+10849474..10850435hypothetical protein
LOC_Os02g18610OsAffx.26471.1.S1_at1/112+10849474..10850435hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2249.1.S1_at--323--6031Chr02:10822931..10822955 (25 bp)
GAGATGGTGTTGCTAGTTGCTTTAC
LOC_Os02g18550
Os.2249.1.S1_at--986--7411Chr02:10822925..10822949 (25 bp)
GTGTTGCTAGTTGCTTTACCTTTTA
LOC_Os02g18550
Os.2249.1.S1_at--267--4871Chr02:10822920..10822944 (25 bp)
GCTAGTTGCTTTACCTTTTAGGAGA
LOC_Os02g18550
Os.2249.1.S1_at--457--3671Chr02:10822906..10822930 (25 bp)
CTTTTAGGAGATTTGGGCTGTTACT
LOC_Os02g18550
Os.2249.1.S1_at--75--8351Chr02:10822891..10822915 (25 bp)
GGCTGTTACTAAATTATGGATGATC
LOC_Os02g18550
Os.2249.1.S1_at--118--3671Chr02:10822862..10822886 (25 bp)
CTTAATGTCAGTTCCGATACCCTTT
LOC_Os02g18550
Os.2249.1.S1_at--906--9611Chr02:10822855..10822879 (25 bp)
TCAGTTCCGATACCCTTTTTTGTCT
LOC_Os02g18550
Os.2249.1.S1_at--721--311Chr02:10822846..10822870 (25 bp)
ATACCCTTTTTTGTCTGCCGAGTTG
LOC_Os02g18550
Os.2249.1.S1_at--703--10351Chr02:10822839..10822863 (25 bp)
TTTTTGTCTGCCGAGTTGGTTTCTC
LOC_Os02g18550
Os.2249.1.S1_at--42--3831Chr02:10822832..10822856 (25 bp)
CTGCCGAGTTGGTTTCTCTGATTAA
LOC_Os02g18550
Os.2249.1.S1_at--284--6831Chr02:10822821..10822845 (25 bp)
GTTTCTCTGATTAAAACCATGGAAA
LOC_Os02g18550
Target Sequence 
GAGATGGTGTTGCTAGTTGCTTTACCTTTTAGGAGATTTGGGCTGTTACTAAATTATGGATGATCAAAACTTAATGTCAG
TTCCGATACCCTTTTTTGTCTGCCGAGTTGGTTTCTCTGATTAAAACCATGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis