Browse Element(s) Details


Os.22635.1.S1_s_at

Description gb:AK070803.1
DB_XREF= gi:32980826
TID=Os.22635.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.22635 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0047G15.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069D21, full insert sequence.
FL= gb:AK109393.2 gb:AK070803.1 gb:AB080694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1008011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10040OsAffx.6629.1.S1_at11/1110+5227474..5233312Cytochrome P450 family protein
LOC_Os10g10050OsAffx.30369.1.S1_at11/1110+5235877..5236083expressed protein
LOC_Os10g10050OsAffx.30369.1.S1_x_at11/1110+5235877..5236083expressed protein
LOC_Os10g10060OsAffx.20668.1.S1_at11/1110+5237005..5237548hypothetical protein
LOC_Os10g10080Os.22635.1.S1_s_at11/1110+5253084..5256529exostosin family protein, putative, expressed
LOC_Os10g10090OsAffx.18200.1.S1_at11/1110+5277265..5277621hypothetical protein
LOC_Os10g10100OsAffx.8201.1.S1_x_at1/1110+5280872..5286442retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22635.1.S1_s_at--963--2131Chr10:5253392..5253416 (25 bp)
ACAGTATATGATAGTGTTATGGCAC
LOC_Os10g10080
Os.22635.1.S1_s_at--759--3591Chr10:5253361..5253385 (25 bp)
CATTCACCATGGCTGGTGTTCTTGT
LOC_Os10g10080
Os.22635.1.S1_s_at--303--4731Chr10:5253350..5253374 (25 bp)
GCTGGTGTTCTTGTGTAAATGACAC
LOC_Os10g10080
Os.22635.1.S1_s_at--526--6311Chr10:5253285..5253309 (25 bp)
GATGAGCGAACCACACCATTGAATG
LOC_Os10g10080
Os.22635.1.S1_s_at--277--5431Chr10:5253278..5253302 (25 bp)
GAACCACACCATTGAATGTAAAGCT
LOC_Os10g10080
Os.22635.1.S1_s_at--847--4471Chr10:5253223..5253247 (25 bp)
GCCTGTATGGCAATGTCTGTTTTGA
LOC_Os10g10080
Os.22635.1.S1_s_at--1019--7171Chr10:5253209..5253233 (25 bp)
GTCTGTTTTGACCATTGTTGTAGTG
LOC_Os10g10080
Os.22635.1.S1_s_at--240--6931Chr10:5253190..5253214 (25 bp)
GTAGTGTTAGCGTATTACAGGTCAT
LOC_Os10g10080
Os.22635.1.S1_s_at--215--1631Chr10:5253182..5253206 (25 bp)
AGCGTATTACAGGTCATGGATTATG
LOC_Os10g10080
Os.22635.1.S1_s_at--969--2371Chr10:5253156..5253180 (25 bp)
AATACTAGTCAATAACCCATACGTT
LOC_Os10g10080
Os.22635.1.S1_s_at--1127--3991Chr10:5253127..5253151 (25 bp)
CGTGCAACTTGCACAGGCTATTTGT
LOC_Os10g10080
Target Sequence 
ACAGTATATGATAGTGTTATGGCACCNATTGCCATTCACCATGGCTGGTGTTCTTGTGTAAATGACACCACCGGATGAGA
AGCTGATCAATGAGGATATATTGATGATGATGAGCGAACCACACCATTGAATGTAAAGCTCCCTTTCCTTGCTTCTTTTT
AAGGCCATGTGCCTGTATGGCAATGTCTGTTTTGACCATTGTTGTAGTGTTAGCGTATTACAGGTCATGGATTATGTAAT
ACTAGTCAATAACCCATACGTTACACCGTGCAACTTGCACAGGCTATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22635.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis