Browse Element(s) Details


OsAffx.18200.1.S1_at

Description tigr:9638.m00882
TID=OsAffx.18200.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1009011/11hypothetical protein
LOC_Os12g104201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10080Os.22635.1.S1_s_at11/1110+5253084..5256529exostosin family protein, putative, expressed
LOC_Os10g10090OsAffx.18200.1.S1_at11/1110+5277265..5277621hypothetical protein
LOC_Os10g10100OsAffx.8201.1.S1_x_at1/1110+5280872..5286442retrotransposon protein, putative, unclassified
LOC_Os10g10110NANA10+5287289..5290454hypothetical protein
LOC_Os10g10119NANA10+5300231..5300554NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18200.1.S1_at--974--82310Chr10:5277295..5277319 (25 bp)
GGCACGCCCGGTGGGACCTGGTTAG
LOC_Os10g10090
OsAffx.18200.1.S1_at--755--8091Chr10:5277308..5277332 (25 bp)
GGACCTGGTTAGAAGTCAGCCGTCA
LOC_Os10g10090
OsAffx.18200.1.S1_at--492--4272Chr12:5521576..5521610 (25 bp)
CCTGGTTAGAAGTCAGCCGTCAGTT
NONE
OsAffx.18200.1.S1_at--768--7831Chr10:5277314..5277338 (25 bp)
GGTTAGAAGTCAGCCGTCAGTTCTT
LOC_Os10g10090
OsAffx.18200.1.S1_at--253--10032Chr12:5521592..5521616 (25 bp)
TAGAAGTCAGCCGTCAGTTCTTCCT
NONE
OsAffx.18200.1.S1_at--194--2852Chr12:5521595..5521619 (25 bp)
AAGTCAGCCGTCAGTTCTTCCTCAT
NONE
OsAffx.18200.1.S1_at--348--96711Chr12:5521598..5521622 (25 bp)
TCAGCCGTCAGTTCTTCCTCATGGC
NONE
OsAffx.18200.1.S1_at--126--10452Chr12:5521661..5521685 (25 bp)
TTAAAGGCAAAGTATCGAAGCCAGG
LOC_Os12g10420
OsAffx.18200.1.S1_at--604--3051Chr10:5277444..5277468 (25 bp)
AATCGATCCGGAGAAGTTCACGCCT
LOC_Os10g10090
OsAffx.18200.1.S1_at--381--3251Chr10:5277502..5277526 (25 bp)
CAAGCGCGGGATCAGTATTTGCTCG
LOC_Os10g10090
OsAffx.18200.1.S1_at--650--1651Chr10:5277504..5277528 (25 bp)
AGCGCGGGATCAGTATTTGCTCGTT
LOC_Os10g10090
Target Sequence 
GGCACGCCCGGTGGGACCTGGTTAGAAGTCAGCCGTCAGTTCTTCCTCATGGCCGAGAAACAAGCACCACCACCATCAAG
CCCAGGCTCCGTTAAAGGCAAAGTATCGAAGCCAGGATTGACTGACATCATTGATGACAATGTCATGCCAATCGATCCGG
AGAAGTTCACGCCTGAGCAGAAGCAGGAGTTTGAAGCAATGATGCAGCAAGCGCGGGATCAGTATTTGCTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis