Browse Element(s) Details


Os.22681.1.S1_at

Description gb:AK107349.1
DB_XREF= gi:32992558
TID=Os.22681.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (P0518F01.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-H03, full insert sequence.
FL= gb:AK107349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4181010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41780Os.40423.2.S1_x_at11/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.1.S1_at10/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41790OsAffx.21393.1.S1_at11/111+23982858..23985164hypothetical protein
LOC_Os01g41800Os.20589.1.S1_at7/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41800Os.26891.1.A1_x_at1/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41810Os.22681.1.S1_at10/111+24000019..24002808Cytochrome P450 family protein, expressed
LOC_Os01g41810Os.26891.1.A1_x_at2/111+24000019..24002808Cytochrome P450 family protein, expressed
LOC_Os01g41820Os.26891.1.A1_x_at10/111+24009122..24012243Cytochrome P450 family protein, expressed
LOC_Os01g41834OsAffx.23626.1.S1_at11/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.23626.2.S1_s_at11/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.23626.1.S1_x_at11/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.23626.2.S1_at10/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.15908.2.S1_x_at1/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22681.1.S1_at--408--2371Chr01:24000685..24000709 (25 bp)
AAACCTGAGTACGATGGCTTGAACA
LOC_Os01g41810
Os.22681.1.S1_at--1129--1751Chr01:24000683..24000707 (25 bp)
ACCTGAGTACGATGGCTTGAACAAC
LOC_Os01g41810
Os.22681.1.S1_at--741--6991Chr01:24000677..24000701 (25 bp)
GTACGATGGCTTGAACAACCTCAAA
LOC_Os01g41810
Os.22681.1.S1_at--60--8291NONE
GGCTTGAACAACCTCAAAATTGTGA
NONE
Os.22681.1.S1_at--873--4351Chr01:24000505..24000529 (25 bp)
CCACCGTTCATCGAGCTTAAGCGGA
LOC_Os01g41810
Os.22681.1.S1_at--777--4231Chr01:24000502..24000526 (25 bp)
CCGTTCATCGAGCTTAAGCGGAGAA
LOC_Os01g41810
Os.22681.1.S1_at--323--3551Chr01:24000497..24000521 (25 bp)
CATCGAGCTTAAGCGGAGAACATAC
LOC_Os01g41810
Os.22681.1.S1_at--1113--4891Chr01:24000491..24000515 (25 bp)
GCTTAAGCGGAGAACATACAAGGAG
LOC_Os01g41810
Os.22681.1.S1_at--1071--7731Chr01:24000436..24000460 (25 bp)
GGTGTCATCATTAATCTTCCCGTGC
LOC_Os01g41810
Os.22681.1.S1_at--414--8731Chr01:24000434..24000458 (25 bp)
TGTCATCATTAATCTTCCCGTGCTG
LOC_Os01g41810
Os.22681.1.S1_at--352--431Chr01:24000430..24000454 (25 bp)
ATCATTAATCTTCCCGTGCTGTTCA
LOC_Os01g41810
Target Sequence 
AAACCTGAGTACGATGGCTTGAACAACCTCAAAATTGTGACAATGATCCTCTATGAGGTTCTTAGGTTGTACCCACCGTT
CATCGAGCTTAAGCGGAGAACATACAAGGAGATGAAGATAGGAGGCGTCACTTACCCTGCTGGTGTCATCATTAATCTTC
CCGTGCTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis