Browse Element(s) Details


OsAffx.23626.1.S1_x_at

Description gb:NM_192650.1
DB_XREF= gi:34912383
GEN=P0518F01.28
TID=OsAffx.23626.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative chalcone synthase (P0518F01.28), mRNA.
PROD=putative chalcone synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4183411/11Chalcone and stilbene synthases, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41800Os.20589.1.S1_at7/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41800Os.26891.1.A1_x_at1/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41810Os.22681.1.S1_at10/111+24000019..24002808Cytochrome P450 family protein, expressed
LOC_Os01g41810Os.26891.1.A1_x_at2/111+24000019..24002808Cytochrome P450 family protein, expressed
LOC_Os01g41820Os.26891.1.A1_x_at10/111+24009122..24012243Cytochrome P450 family protein, expressed
LOC_Os01g41834OsAffx.23626.1.S1_at11/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.23626.2.S1_s_at11/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.23626.1.S1_x_at11/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.23626.2.S1_at10/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.15908.2.S1_x_at1/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41850Os.53217.1.S1_x_at1/111+24028928..24030892transposon protein, putative, unclassified
LOC_Os01g41850Os.38172.1.S1_x_at1/111+24028928..24030892transposon protein, putative, unclassified
LOC_Os01g41850Os.43567.1.S1_x_at1/111+24028928..24030892transposon protein, putative, unclassified
LOC_Os01g41860NANA1+24039153..24040084hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23626.1.S1_x_at--1012--9411Chr01:24015711..24015735 (25 bp)
TCGGGAACCTCGTCGGCCAGGCCAT
LOC_Os01g41834
OsAffx.23626.1.S1_x_at--928--7171Chr01:24015700..24015724 (25 bp)
GTCGGCCAGGCCATCTTCGGCGACG
LOC_Os01g41834
OsAffx.23626.1.S1_x_at--618--4611Chr01:24015630..24015654 (25 bp)
GCGAGCGTGCCATGTTCGAGATCGT
LOC_Os01g41834
OsAffx.23626.1.S1_x_at--556--731Chr01:24015619..24015643 (25 bp)
ATGTTCGAGATCGTGTCGGCGTCGC
LOC_Os01g41834
OsAffx.23626.1.S1_x_at--454--7971Chr01:24015540..24015564 (25 bp)
GGATCGTGTTCACCCTGCACCGGGA
LOC_Os01g41834
OsAffx.23626.1.S1_x_at--438--7291Chr01:24015514..24015538 (25 bp)
GTGCCGCGGCAGATCGGAGACTCCA
LOC_Os01g41834
OsAffx.23626.1.S1_x_at--958--4551Chr01:24015412..24015436 (25 bp)
GCGCCGGACTTGAACGGGATGTTCT
LOC_Os01g41834
OsAffx.23626.1.S1_x_at--266--6291Chr01:24015395..24015419 (25 bp)
GATGTTCTGGGTGGTGCACGCCGGC
LOC_Os01g41834
OsAffx.23626.1.S1_x_at--233--331Chr01:24015361..24015385 (25 bp)
ATACTGGACAGGATGGAGAGCAAGC
LOC_Os01g41834
OsAffx.23626.1.S1_x_at--921--2691Chr01:24015319..24015343 (25 bp)
AAGCTCGAGGCGTCCAGGGCCGTCA
LOC_Os01g41834
OsAffx.23626.1.S1_x_at--553--9191Chr01:24015307..24015331 (25 bp)
TCCAGGGCCGTCATGGCGCAGTACG
LOC_Os01g41834
Target Sequence 
TCGGGAACCTCGTCGGCCAGGCCATCTTCGGCGACGCCGCGGGCGCCGTCGTCGTCGGGTCCTGCCCCGCCGCCGCCGCC
GGCGAGCGTGCCATGTTCGAGATCGTGTCGGCGTCGCAGGAGGTCGTGCCCGGGACGAGGGACGCGGTGGTGTCGGAGCT
GCGGGAGGAGGGGATCGTGTTCACCCTGCACCGGGACGTGCCGCGGCAGATCGGAGACTCCATCGGCCGCCTGGTGGAGC
GCGCGCTGCTGGCGCAGCAGCAGCCGGCCAACGCCGCCATCGGCGCCGCTGACGCCGCGGCGCCGGACTTGAACGGGATG
TTCTGGGTGGTGCACGCCGGCGGCAGGGAGATACTGGACAGGATGGAGAGCAAGCTGGGCCTGGGAAAGGAGAAGCTCGA
GGCGTCCAGGGCCGTCATGGCGCAGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23626.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis