Browse Element(s) Details


Os.22750.1.S1_at

Description gb:AK103280.1
DB_XREF= gi:32988489
TID=Os.22750.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.22750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124L19, full insert sequence.
FL= gb:AK103280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4641011/11auxin response factor 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46366Os.17420.1.S1_at11/116+28132803..28137103Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g46372OsAffx.15952.1.S1_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46372Os.51846.1.S1_x_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46380Os.7455.1.S1_at11/116+28142933..28147374Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os06g46390Os.51643.1.S1_at11/116+28147995..28148791small nuclear ribonucleoprotein, putative, expressed
LOC_Os06g46400Os.18000.1.A1_at11/116+28150362..28155785YT521-B-like family protein, expressed
LOC_Os06g46410Os.22750.1.S1_at11/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46410OsAffx.28217.1.S1_at1/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46420OsAffx.15953.1.S1_at11/116+28171763..28172389hypothetical protein
LOC_Os06g46430OsAffx.28132.1.S1_at8/116+28176435..28177924hypothetical protein
LOC_Os06g46440OsAffx.15954.1.S1_at11/116+28188529..28189857expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009785biological_processblue light signaling pathway
GO:0009908biological_processflower development
GO:0040008biological_processregulation of growth
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22750.1.S1_at--908--2511Chr06:28158162..28158186 (25 bp)
AACTAGGGCGCCTATTTGGCCTTGA
LOC_Os06g46410
Os.22750.1.S1_at--527--9411Chr06:28158093..28158117 (25 bp)
TCGTCGACCGAGAGGATGATGTCCT
LOC_Os06g46410
Os.22750.1.S1_at--595--711Chr06:28158078..28158102 (25 bp)
ATGATGTCCTCCTCGTTGGCGACGA
LOC_Os06g46410
Os.22750.1.S1_at--153--8471Chr06:28157799..28158086 (25 bp)
TGGCGACGACCCTTGGCAGGAATTC
LOC_Os06g46410
Os.22750.1.S1_at--582--3151Chr06:28157962..28157986 (25 bp)
AATTCGTGAATAGCGTCTCCTGCAT
LOC_Os06g46410
Os.22750.1.S1_at--1130--791Chr06:28157906..28157930 (25 bp)
ATGGGCAAGCCCTTTGAGCTTTTGA
LOC_Os06g46410
Os.22750.1.S1_at--300--3171Chr06:28157802..28157826 (25 bp)
AATTGCATCTGTCGGCTCAGTTGAA
LOC_Os06g46410
Os.22750.1.S1_at--529--9991Chr06:28157738..28157762 (25 bp)
TAGCCTGTTACCTATGTTTCTGCAG
LOC_Os06g46410
Os.22750.1.S1_at--231--10551Chr06:28157710..28157734 (25 bp)
TTCTTCCCCTAGTTTTGAGACCTGG
LOC_Os06g46410
Os.22750.1.S1_at--517--5491Chr06:28157677..28157701 (25 bp)
GAACATAGATCCATGCTTAGCTAAG
LOC_Os06g46410
Os.22750.1.S1_at--983--3031Chr06:28157548..28157572 (25 bp)
AATCCTGTGAATGTAGGCCATCTAA
LOC_Os06g46410
Target Sequence 
AACTAGGGCGCCTATTTGGCCTTGAGGGCCAGTTGGAAAACCCTTNGAGATCAGGCTGGCAGCTTGTATTCGTCGACCGA
GAGGATGATGTCCTCCTCGTTGGCGACGACCCTTGGCAGGAATTCGTGAATAGCGTCTCCTGCATAAAGATACTTTCACC
ACAGGAGGTGCAGCAGATGGGCAAGCCCTTTGAGCTTTTGAGCTCGGCTCCNGGAAAGAGGCTAGGTAGCAGCTGTGATG
ACTATGTGAGCAGGCAGGAATCAAGAAGCCTGAGCACAGGAATTGCATCTGTCGGCTCAGTTGAATTCTGAAGCNAGGGC
GCTAACGAGCCCTTCAATCAAATCTAGCCTGTTACCTATGTTTCTGCAGTTTTTCTTCCCCTAGTTTTGAGACCTGGAAC
TGAAAGAACATAGATCCATGCTTAGCTAAGTTATGTACCATCTAATAATTATGCTATATGATATCAAATTCCAAGTAGAA
ACTATCAACTTTTGGTATATATATATATACCAAAACTTTGTTCCATGAAACACTAATCCTGTGAATGTAGGCCATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis