Browse Element(s) Details


Os.22776.1.S1_s_at

Description gb:AK065107.1
DB_XREF= gi:32975125
TID=Os.22776.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001N19, full insert sequence.
FL= gb:AK065107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4188011/11Hyaluronan/mRNA binding family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41870Os.46049.1.S1_at11/111+24054178..24059925protein kinase family protein, putative, expressed
LOC_Os01g41880Os.22776.1.S1_s_at11/111+24067725..24071843Hyaluronan/mRNA binding family protein, expressed
LOC_Os01g41890Os.33928.1.S1_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.4.A1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.1.S1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890OsAffx.24510.1.S1_x_at1/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41900Os.15138.1.S1_at11/111+24087195..24089348MCB2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22776.1.S1_s_at--23--1171Chr01:24068365..24068389 (25 bp)
AGTCAATGCAACAGCTCTCAGTGAA
LOC_Os01g41880
Os.22776.1.S1_s_at--506--5551Chr01:24068052..24068076 (25 bp)
GAAAGATACTACAGCCCAGGTGGGC
LOC_Os01g41880
Os.22776.1.S1_s_at--615--7931Chr01:24067989..24068013 (25 bp)
GGATTCCGGGATGGCTATAGCTCTC
LOC_Os01g41880
Os.22776.1.S1_s_at--288--10191Chr01:24067974..24067998 (25 bp)
TATAGCTCTCGAGGTCCTGTTGCCG
LOC_Os01g41880
Os.22776.1.S1_s_at--854--5331Chr01:24067938..24067962 (25 bp)
GAAGATCAAGCGCAGTTTCCCGGCT
LOC_Os01g41880
Os.22776.1.S1_s_at--1123--8631Chr01:24067909..24067933 (25 bp)
TGGGAGATTGGTGCACTAGCTGCCA
LOC_Os01g41880
Os.22776.1.S1_s_at--443--271Chr01:24067882..24067906 (25 bp)
ATATGATCTCCTTGCACTTTTTGTG
LOC_Os01g41880
Os.22776.1.S1_s_at--137--2451Chr01:24067849..24067873 (25 bp)
AAAATGTGTCTGCACGCGTTGCTTG
LOC_Os01g41880
Os.22776.1.S1_s_at--8--4051Chr01:24067833..24067857 (25 bp)
CGTTGCTTGCTGCATCAGTGTTGTA
LOC_Os01g41880
Os.22776.1.S1_s_at--753--7411Chr01:24067816..24067840 (25 bp)
GTGTTGTACTGTCAAGCTACGCATA
LOC_Os01g41880
Os.22776.1.S1_s_at--871--8671Chr01:24067782..24067806 (25 bp)
TGTGTCTCATGTATACCCGTGCGGC
LOC_Os01g41880
Target Sequence 
AGTCAATGCAACAGCTCTCAGTGAAGAAGGATTCTGATGAAGTGTTCATCAAGCTGGGTTNTGACAAGGNCAAAAAGAAA
GAAAATGTTGAAAGAGATGAACGCACCAGGAAGTCTNTTAGCATCAATGAATTCCTGAAGCCGGCTGAAGGTGAAAGATA
CTACAGCCCAGGTGGGCGGGGGCGGGGACGTGGCAGAGGACGTGGTGACCGTGGAGGATTCCGGGATGGCTATAGCTCTC
GAGGTCCTGTTGCCGCNCCAAGAATTGAAGATCAAGCGCAGTTTCCCGGCTTGGCTGGGAGATTGGTGCACTAGCTGCCA
TGATATGATCTCCTTGCACTTTTTGTGGGATTTTAAAAATGTGTCTGCACGCGTTGCTTGCTGCATCAGTGTTGTACTGT
CAAGCTACGCATATNGCCACTNTTGTGTCTCATGTATACCCGTGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22776.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis