Browse Element(s) Details


Os.15138.1.S1_at

Description gb:AK103432.1
DB_XREF= gi:32988641
TID=Os.15138.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Myb-related transcription factor (B1085F01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128P13, full insert sequence.
FL= gb:AK103432.1 gb:AK061500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4190011/11MCB2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41880Os.22776.1.S1_s_at11/111+24067725..24071843Hyaluronan/mRNA binding family protein, expressed
LOC_Os01g41890Os.33928.1.S1_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.4.A1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.1.S1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890OsAffx.24510.1.S1_x_at1/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41900Os.15138.1.S1_at11/111+24087195..24089348MCB2 protein, putative, expressed
LOC_Os01g41910OsAffx.9156.2.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_s_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41920NANA1+24099163..24099531hypothetical protein
LOC_Os01g41930Os.9136.2.A1_at10/111+24103314..24106595Leucine Rich Repeat family protein, expressed
LOC_Os01g41939NANA1+24108196..24109223NA
LOC_Os01g41950Os.30203.1.S1_at11/111+24109678..24112621expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15138.1.S1_at--1085--10371Chr01:24088749..24088773 (25 bp)
TTTTCCCGGTGGTTCTGATGGAGCA
LOC_Os01g41900
Os.15138.1.S1_at--356--651Chr01:24088889..24088913 (25 bp)
ATGCACACCGTCGTCGTTAGGAGAT
LOC_Os01g41900
Os.15138.1.S1_at--1138--1291Chr01:24088910..24088934 (25 bp)
AGATGCTCCAGTTTCGTCGGTGCAA
LOC_Os01g41900
Os.15138.1.S1_at--551--1031Chr01:24088934..24088958 (25 bp)
AGGTCTGCAGGATATAGTACACGCT
LOC_Os01g41900
Os.15138.1.S1_at--598--7031Chr01:24088950..24088974 (25 bp)
GTACACGCTGTAAAACTGTGGCTGA
LOC_Os01g41900
Os.15138.1.S1_at--240--7951Chr01:24089093..24089117 (25 bp)
GGATACAGTAATGTCCGTACTACTT
LOC_Os01g41900
Os.15138.1.S1_at--211--4051Chr01:24089150..24089174 (25 bp)
CGATTCTCTACTGCTCATGTCATGT
LOC_Os01g41900
Os.15138.1.S1_at--229--7131Chr01:24089168..24089192 (25 bp)
GTCATGTGCGCCTTGTGTTCATTGG
LOC_Os01g41900
Os.15138.1.S1_at--700--1251Chr01:24089213..24089237 (25 bp)
AGATTGCAACTCTGCCATTGCTGAT
LOC_Os01g41900
Os.15138.1.S1_at--566--7471Chr01:24089238..24089262 (25 bp)
GTGTGGAATTGGCAACCTGACAGTC
LOC_Os01g41900
Os.15138.1.S1_at--753--6251Chr01:24089317..24089341 (25 bp)
GATGCACTTAATGCGATTTCCCCAT
LOC_Os01g41900
Target Sequence 
TTTTCCCGGTGGTTCTGATGGAGCAGCAGCAGCAGGCTTCCCATGGACATGGNCACCACCACCACTGCACGCCGCTNGAC
CTGGAGCTCGGCATGTCCGTCTCGTCGACGCCGTCCATCGGCACATGACCCGGCCATGCCATGCACACCGTCGTCGTTAG
GAGATGCTCCAGTTTCGTCGGTGCAAGGTCTGCAGGATATAGTACACGCTGTAAAACTGTGGCTGATATATCTGCAGTCT
GANCTGTCTGCCAAGTGGAGTAAAGGGCTGGAGTATTTTGGCAAATGTTTGTAGTAATTGTAAAGCTGGTGCAAGTGGAG
AGATCAACGAGTAGTACCAACTGTGGATACAGTAATGTCCGTACTACTTTTTAATTAATTAGGTTGTGTAATCAGAGACA
CCGATTCTCTACTGCTCATGTCATGTGCGCCTTGTGTTCATTGGCTTTTGCTTAAGTTTTGGGAAGATTGCAACTCTGCC
ATTGCTGATGTGTGGAATTGGCAACCTGACAGTCCAAATGCAAGAAAGGTTTTTTTTTTCTGAAACCAGAATGAACTAAA
TATGAAAATGATGCACTTAATGCGATTTCCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis