Browse Element(s) Details


OsAffx.9156.1.S1_at

Description gb:NM_192662.1
DB_XREF= gi:34912407
GEN=B1085F01.23
TID=OsAffx.9156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative Cf2Cf5 disease resistance protein (B1085F01.23), mRNA.
PROD=putative Cf2Cf5 disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4191011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41890Os.33928.1.S1_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.4.A1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.1.S1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890OsAffx.24510.1.S1_x_at1/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41900Os.15138.1.S1_at11/111+24087195..24089348MCB2 protein, putative, expressed
LOC_Os01g41910OsAffx.9156.2.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_s_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41920NANA1+24099163..24099531hypothetical protein
LOC_Os01g41930Os.9136.2.A1_at10/111+24103314..24106595Leucine Rich Repeat family protein, expressed
LOC_Os01g41939NANA1+24108196..24109223NA
LOC_Os01g41950Os.30203.1.S1_at11/111+24109678..24112621expressed protein
LOC_Os01g41960OsAffx.797.1.S1_at11/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_s_at9/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.1.S1_at6/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_at3/111+24114808..24123820retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9156.1.S1_at--90--5191Chr01:24097560..24097584 (25 bp)
GCAATGATTCAAGGTAATAGTACAA
LOC_Os01g41910
OsAffx.9156.1.S1_at--927--2411Chr01:24097583..24097607 (25 bp)
AAAATATACTAATCCCTTGGTGTGG
LOC_Os01g41910
OsAffx.9156.1.S1_at--491--311Chr01:24097588..24097612 (25 bp)
ATACTAATCCCTTGGTGTGGAATTA
LOC_Os01g41910
OsAffx.9156.1.S1_at--259--9751Chr01:24097592..24097616 (25 bp)
TAATCCCTTGGTGTGGAATTACTAT
LOC_Os01g41910
OsAffx.9156.1.S1_at--1151--7491Chr01:24097604..24097628 (25 bp)
GTGGAATTACTATAGGCCAAGAAAT
LOC_Os01g41910
OsAffx.9156.1.S1_at--424--8451Chr01:24097618..24097642 (25 bp)
GGCCAAGAAATCCAAACGACTTCAA
LOC_Os01g41910
OsAffx.9156.1.S1_at--83--2391Chr01:24097631..24097655 (25 bp)
AAACGACTTCAATGATGGGTACTAC
LOC_Os01g41910
OsAffx.9156.1.S1_at--831--5691Chr01:24097635..24097659 (25 bp)
GACTTCAATGATGGGTACTACGTAA
LOC_Os01g41910
OsAffx.9156.1.S1_at--23--7671Chr01:24097647..24097671 (25 bp)
GGGTACTACGTAAAATATCATAATA
LOC_Os01g41910
OsAffx.9156.1.S1_at--232--431Chr01:24097663..24097687 (25 bp)
ATCATAATAGCCTACTGGTTGTGGT
LOC_Os01g41910
OsAffx.9156.1.S1_at--790--291Chr01:24097669..24097692 (24 bp)
ATAGCCTACTGGTTGTGGTAAAAGA
LOC_Os01g41910
Target Sequence 
GCAATGATTCAAGGTAATAGTACAAAATATACTAATCCCTTGGTGTGGAATTACTATAGGCCAAGAAATCCAAACGACTT
CAATGATGGGTACTACGTAAAATATCATAATAGCCTACTGGTTGTGGTAAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis