Browse Element(s) Details


OsAffx.797.1.S1_at

Description gb:NM_192667.1
DB_XREF= gi:34912417
GEN=B1085F01.28
TID=OsAffx.797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative Cf2Cf5 disease resistance protein (B1085F01.28), mRNA.
PROD=putative Cf2Cf5 disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4196011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41910OsAffx.9156.2.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_s_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41920NANA1+24099163..24099531hypothetical protein
LOC_Os01g41930Os.9136.2.A1_at10/111+24103314..24106595Leucine Rich Repeat family protein, expressed
LOC_Os01g41939NANA1+24108196..24109223NA
LOC_Os01g41950Os.30203.1.S1_at11/111+24109678..24112621expressed protein
LOC_Os01g41960OsAffx.797.1.S1_at11/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_s_at9/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.1.S1_at6/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_at3/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41970OsAffx.21389.2.S1_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41970OsAffx.21389.1.S1_s_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41980OsAffx.2212.3.A1_at11/111+24132972..24135701hypothetical protein
LOC_Os01g41980Os.32118.2.S1_x_at1/111+24132972..24135701hypothetical protein
LOC_Os01g41990Os.6024.1.S1_at10/111+24136996..24138405EF hand family protein, expressed
LOC_Os01g42000NANA1+24140040..24141457expressed protein
LOC_Os01g42010Os.25471.2.S1_x_at11/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_at10/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_x_at10/111+24141670..24146121expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.797.1.S1_at--5--8131Chr01:24116100..24116124 (25 bp)
GGACTTGAGCTACACTTCTTTAGAG
LOC_Os01g41960
OsAffx.797.1.S1_at--511--8111Chr01:24116144..24116168 (25 bp)
GGACTCCTCCATTCAAGTTAATCAG
LOC_Os01g41960
OsAffx.797.1.S1_at--806--1491Chr01:24116169..24116193 (25 bp)
AGCACAACTGGCTTCATGTCAACTG
LOC_Os01g41960
OsAffx.797.1.S1_at--748--8631Chr01:24116185..24116209 (25 bp)
TGTCAACTGGGTCCGGGATTTCCTA
LOC_Os01g41960
OsAffx.797.1.S1_at--535--9991Chr01:24116264..24116288 (25 bp)
TAGCCGATGCAATCCCAAGTTGGTT
LOC_Os01g41960
OsAffx.797.1.S1_at--943--2871Chr01:24116410..24116434 (25 bp)
AAGGGCTCAATTCCGCAATTACTCA
LOC_Os01g41960
OsAffx.797.1.S1_at--520--10031Chr01:24116460..24116484 (25 bp)
TAGAAACTCCTTATCTGCACCATTG
LOC_Os01g41960
OsAffx.797.1.S1_at--294--5091Chr01:24116476..24116500 (25 bp)
GCACCATTGCCTTCAGATTTTCAAG
LOC_Os01g41960
OsAffx.797.1.S1_at--726--6511Chr01:24116491..24116515 (25 bp)
GATTTTCAAGCTCCGGAATTGGCAG
LOC_Os01g41960
OsAffx.797.1.S1_at--1138--3171Chr01:24116507..24116531 (25 bp)
AATTGGCAGCACTTGTCCTATTCTC
LOC_Os01g41960
OsAffx.797.1.S1_at--1034--10211Chr01:24116525..24116549 (25 bp)
TATTCTCCAACTACATTCCAGGCAG
LOC_Os01g41960
Target Sequence 
GGACTTGAGCTACACTTCTTTAGAGGTTGTTGTGGGTTCCACATGGACTCCTCCATTCAAGTTAATCAGAGCACAACTGG
CTTCATGTCAACTGGGTCCGGGATTTCCTATCTTGTTTAAACACCAAAAGGGCATTATCTACATTGATGTTTCAAATGCA
GGCATAGCCGATGCAATCCCAAGTTGGTTTTGGGATGAAATTTCCTATGCATTTTATGTGGATATGTCTCACAATCAAAT
TGATGGAGAATTACCAGCCAAACTTGAAGCGAGGACAAGGCAAGAATTGCACCTCAATTCAAACCAGCTAAAGGGCTCAA
TTCCGCAATTACTCAGAAATATCACCAAGCTAGACATCTCTAGAAACTCCTTATCTGCACCATTGCCTTCAGATTTTCAA
GCTCCGGAATTGGCAGCACTTGTCCTATTCTCCAACTACATTCCAGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis