Browse Element(s) Details


OsAffx.21389.1.S1_s_at

Description gb:NM_192668.1
DB_XREF= gi:34912419
GEN=P0681B11.14
TID=OsAffx.21389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0681B11.14 (P0681B11.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4197011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41930Os.9136.2.A1_at10/111+24103314..24106595Leucine Rich Repeat family protein, expressed
LOC_Os01g41939NANA1+24108196..24109223NA
LOC_Os01g41950Os.30203.1.S1_at11/111+24109678..24112621expressed protein
LOC_Os01g41960OsAffx.797.1.S1_at11/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_s_at9/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.1.S1_at6/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_at3/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41970OsAffx.21389.2.S1_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41970OsAffx.21389.1.S1_s_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41980OsAffx.2212.3.A1_at11/111+24132972..24135701hypothetical protein
LOC_Os01g41980Os.32118.2.S1_x_at1/111+24132972..24135701hypothetical protein
LOC_Os01g41990Os.6024.1.S1_at10/111+24136996..24138405EF hand family protein, expressed
LOC_Os01g42000NANA1+24140040..24141457expressed protein
LOC_Os01g42010Os.25471.2.S1_x_at11/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_at10/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_x_at10/111+24141670..24146121expressed protein
LOC_Os01g42020OsAffx.380.1.S1_at3/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42020OsAffx.21975.1.S1_x_at1/111+24149934..24155232retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21389.1.S1_s_at--893--9411Chr01:24128160..24128184 (25 bp)
TCGTGAACTCCGACGCCGGATTGGT
LOC_Os01g41970
OsAffx.21389.1.S1_s_at--272--371Chr01:24128225..24128249 (25 bp)
ATCAATATGCCCTTTCGGATCAACG
LOC_Os01g41970
OsAffx.21389.1.S1_s_at--1029--7951Chr01:24128241..24128265 (25 bp)
GGATCAACGATTCTGCGGCCAACAA
LOC_Os01g41970
OsAffx.21389.1.S1_s_at--760--2731Chr01:24128295..24128319 (25 bp)
AAGAAGAATCTTCGCCAATTTCCCT
LOC_Os01g41970
OsAffx.21389.1.S1_s_at--5--5851Chr01:24128321..24128345 (25 bp)
GACCTACACTTGATTTGCTCGGAAG
LOC_Os01g41970
OsAffx.21389.1.S1_s_at--261--1331Chr01:24128344..24128368 (25 bp)
AGAGGATCCCATGTCATTCCAGCTG
LOC_Os01g41970
OsAffx.21389.1.S1_s_at--824--5331Chr01:24128591..24128615 (25 bp)
GAAGTTCACAGTCCACGAGATCCCG
LOC_Os01g41970
OsAffx.21389.1.S1_s_at--1095--6851Chr01:24128616..24128640 (25 bp)
GTATTCTCCGAGGTCCAACAGGGTT
LOC_Os01g41970
OsAffx.21389.1.S1_s_at--394--5051Chr01:24128641..24128665 (25 bp)
GCAGCTTCGCCGTTGGTGAAACCAA
LOC_Os01g41970
OsAffx.21389.1.S1_s_at--1045--3271Chr01:24128663..24128687 (25 bp)
CAAAGATGACGTCCCTTGCATTGTC
LOC_Os01g41970
OsAffx.21389.1.S1_s_at--332--9071Chr01:24128679..24128703 (25 bp)
TGCATTGTCTGCGTCGTCGGAACCA
LOC_Os01g41970
Target Sequence 
TCGTGAACTCCGACGCCGGATTGGTCGCCACCGTCAACCCCATGGCCCCGCGGATGACAGATTTCATCAATATGCCCTTT
CGGATCAACGATTCTGCGGCCAACAATGCGGGTGCGGCAGATGCCACCGGCCAAGAAGAAGAATCTTCGCCAATTTCCCT
CGACCTACACTTGATTTGCTCGGAAGAGGATCCCATGTCATTCCAGCTGAACAAGGAGCACATGCTGGTGCTGGACACCA
ACACCATGAAGTTCACAGTCCACGAGATCCCGGTATTCTCCGAGGTCCAACAGGGTTGCAGCTTCGCCGTTGGTGAAACC
AAAGATGACGTCCCTTGCATTGTCTGCGTCGTCGGAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21389.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis