Browse Element(s) Details


OsAffx.21975.1.S1_x_at

Description gb:NM_183665.1
DB_XREF= gi:34894457
GEN=OSJNBa0025P13.24
TID=OsAffx.21975.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0025P13.24 (OSJNBa0025P13.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g453801/11hypothetical protein
LOC_Os01g420201/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45330OsAffx.19389.1.S1_at11/1111+26920969..26923753NB-ARC domain containing protein, expressed
LOC_Os11g45339NANA11+26925390..26925831NA
LOC_Os11g45350OsAffx.31487.2.S1_at11/1111+26928363..26930224hypothetical protein
LOC_Os11g45350OsAffx.31487.1.S1_at4/1111+26928363..26930224hypothetical protein
LOC_Os11g45360OsAffx.31488.1.S1_at10/1111+26930803..26931275hypothetical protein
LOC_Os11g45370NANA11+26935213..26935626hypothetical protein
LOC_Os11g45380OsAffx.31489.1.S1_at10/1111+26943016..26945985hypothetical protein
LOC_Os11g45380OsAffx.21975.1.S1_x_at1/1111+26943016..26945985hypothetical protein
LOC_Os11g45390OsAffx.31490.1.S1_at11/1111+26960793..26968059von Willebrand factor type A domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21975.1.S1_x_at--625--6911Chr01:10918681..10918705 (25 bp)
GTATGTGCTCCGACGCCGCACATTG
NONE
OsAffx.21975.1.S1_x_at--856--9271Chr01:10918673..10918697 (25 bp)
TCCGACGCCGCACATTGGTGGTGAC
NONE
OsAffx.21975.1.S1_x_at--342--5811Chr01:10918670..10918694 (25 bp)
GACGCCGCACATTGGTGGTGACATG
NONE
OsAffx.21975.1.S1_x_at--629--2071Chr01:10918662..10918686 (25 bp)
ACATTGGTGGTGACATGGAGGAAAC
NONE
OsAffx.21975.1.S1_x_at--578--2931Chr01:10918629..10918653 (25 bp)
AAGGCATCGTTAGAGACGCCGACGG
NONE
OsAffx.21975.1.S1_x_at--779--79750Chr12:9523890..9524023 (25 bp)
GGATCGAAAAATGCCCGTGCGTTGC
NONE
OsAffx.21975.1.S1_x_at--1015--9132Chr04:1580484..1580508 (25 bp)
TGCGGAAGACGCATGCTCGACGCGA
NONE
OsAffx.21975.1.S1_x_at--924--3772Chr04:1580499..1580523 (25 bp)
CTCGACGCGAGGTGGTGGAATCAGA
NONE
OsAffx.21975.1.S1_x_at--68--412Chr04:1580518..1580542 (25 bp)
ATCAGACAGCGCGAGCGCGTGCGAC
NONE
OsAffx.21975.1.S1_x_at--340--4572Chr04:1580532..1580556 (25 bp)
GCGCGTGCGACGACGGACGAAAAAA
NONE
OsAffx.21975.1.S1_x_at--949--9913Chr04:1580560..1580584 (25 bp)
TACGGAAGCCAAATTTAAATTCAGT
NONE
Target Sequence 
GTATGTGCTCCGACGCCGCACATTGGTGGTGACATGGAGGAAACCGGCGAGGAAGGCATCGTTAGAGACGCCGACGGGAG
GGATCGAAAAATGCCCGTGCGTTGCAACGGGATGCGGAAGACGCATGCTCGACGCGAGGTGGTGGAATCAGACAGCGCGA
GCGCGTGCGACGACGGACGAAAAAAATCTACGGAAGCCAAATTTAAATTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21975.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis