Browse Element(s) Details


OsAffx.31490.1.S1_at

Description tigr:9639.m04221
TID=OsAffx.31490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=von Willebrand factor type A domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4539011/11von Willebrand factor type A domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45380OsAffx.31489.1.S1_at10/1111+26943016..26945985hypothetical protein
LOC_Os11g45380OsAffx.21975.1.S1_x_at1/1111+26943016..26945985hypothetical protein
LOC_Os11g45390OsAffx.31490.1.S1_at11/1111+26960793..26968059von Willebrand factor type A domain containing protein
LOC_Os11g45400Os.20982.1.S1_at11/1111+26980112..26983462Acyltransferase family protein, expressed
LOC_Os11g45400OsAffx.32071.1.S1_x_at2/1111+26980112..26983462Acyltransferase family protein, expressed
LOC_Os11g45410OsAffx.31491.1.S1_x_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410OsAffx.31491.1.S1_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410Os.52021.1.S1_at4/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45420NANA11+26992018..26994884retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31490.1.S1_at--102--5371Chr11:26961354..26961378 (25 bp)
GAAGAAGTTCATCGTCCACCTGAAG
LOC_Os11g45390
OsAffx.31490.1.S1_at--764--1711Chr11:26961311..26961335 (25 bp)
ACCACCGTCAATAACCAGCAGGAGA
LOC_Os11g45390
OsAffx.31490.1.S1_at--217--5011Chr11:26961294..26961318 (25 bp)
GCAGGAGATTCTCACAGCCGACGGC
LOC_Os11g45390
OsAffx.31490.1.S1_at--566--4371Chr11:26961265..26961289 (25 bp)
CCAACTCGGTGGACGGGAAGACAGT
LOC_Os11g45390
OsAffx.31490.1.S1_at--157--8171Chr11:26961231..26961255 (25 bp)
GGAACACAAACTGGCCATCCGGAGG
LOC_Os11g45390
OsAffx.31490.1.S1_at--694--9131Chr11:26961133..26961157 (25 bp)
TGCTGGACATGGTACCCAAGACGTT
LOC_Os11g45390
OsAffx.31490.1.S1_at--888--2751Chr11:26961116..26961140 (25 bp)
AAGACGTTCCAGCAGCGTAGAGAAG
LOC_Os11g45390
OsAffx.31490.1.S1_at--637--6031Chr11:26961029..26961053 (25 bp)
GAGATAAGGCGCTCCGATGCCTGGA
LOC_Os11g45390
OsAffx.31490.1.S1_at--867--4051Chr11:26960986..26961010 (25 bp)
CGAGGCGACGCATCGACGAACAGGT
LOC_Os11g45390
OsAffx.31490.1.S1_at--365--2791Chr11:26960959..26960983 (25 bp)
AAGAGATTGCGGACCACGTTGAGAA
LOC_Os11g45390
OsAffx.31490.1.S1_at--240--2871Chr11:26960929..26960953 (25 bp)
AAGGGCCAGCCTATGTCAACTCGTG
LOC_Os11g45390
Target Sequence 
GAAGAAGTTCATCGTCCACCTGAAGGTGCCCAAGGTGTCGGCCACCACCGTCAATAACCAGCAGGAGATTCTCACAGCCG
ACGGCGACGCCAACTCGGTGGACGGGAAGACAGTCCGCATTAAGGAACACAAACTGGCCATCCGGAGGCCGCCAGAGGTC
GTCGACCAGGCCGACCTCCGGCCAGCACCACAGGTCGTGGAGCAGGTGGTGGTGTTCAAGCTGCTGGACATGGTACCCAA
GACGTTCCAGCAGCGTAGAGAAGATGATCACAAGGGCGTGAAGAATACCAAGGTGGCCGTGCAGCTGCTGCAGCGGAACA
TGGACGAGATAAGGCGCTCCGATGCCTGGACAGACCTGGATGTGGGCACGAGGCGACGCATCGACGAACAGGTGAAAGAG
ATTGCGGACCACGTTGAGAAAGGAGAAGGGCCAGCCTATGTCAACTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis