Browse Element(s) Details


Os.52021.1.S1_at

Description gb:AK064550.1
DB_XREF= gi:32974568
TID=Os.52021.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B10, full insert sequence.
FL= gb:AK064550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g454104/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45390OsAffx.31490.1.S1_at11/1111+26960793..26968059von Willebrand factor type A domain containing protein
LOC_Os11g45400Os.20982.1.S1_at11/1111+26980112..26983462Acyltransferase family protein, expressed
LOC_Os11g45400OsAffx.32071.1.S1_x_at2/1111+26980112..26983462Acyltransferase family protein, expressed
LOC_Os11g45410OsAffx.31491.1.S1_x_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410OsAffx.31491.1.S1_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410Os.52021.1.S1_at4/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45420NANA11+26992018..26994884retrotransposon protein, putative, unclassified
LOC_Os11g45430OsAffx.22272.1.S1_at3/1111+26996392..26996955transposon protein, putative, unclassified
LOC_Os11g45440OsAffx.199.1.S1_at1/1111+27006026..27007478retrotransposon protein, putative, unclassified
LOC_Os11g45450OsAffx.19391.1.S1_at11/1111+27012632..27013159hypothetical protein
LOC_Os11g45460OsAffx.31492.1.S1_at11/1111+27015003..27016551hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52021.1.S1_at--540--6571Chr11:26986144..26986168 (25 bp)
GATTCTACCAGTTCAGTGTGGGCAC
LOC_Os11g45410
Os.52021.1.S1_at--310--971Chr11:26986072..26986096 (25 bp)
AGGAGCTCGTGCTGCAACAGTAATA
LOC_Os11g45410
Os.52021.1.S1_at--281--7071Chr11:26985833..26985857 (25 bp)
GTAAGTGCGTACAACTCGGCGGTGC
LOC_Os11g45410
Os.52021.1.S1_at--1119--3771Chr11:26985819..26985843 (25 bp)
CTCGGCGGTGCATTAATACAGTACT
LOC_Os11g45410
Os.52021.1.S1_at--786--1151Chr11:26985626..26985650 (25 bp)
AGTCAAGTAGACTCCTGTTCGTTGT
NONE
Os.52021.1.S1_at--490--8271Chr11:26985575..26985599 (25 bp)
GGCAGGCAGAGTCCACCATGATCAG
NONE
Os.52021.1.S1_at--162--8191Chr11:26985551..26985575 (25 bp)
GGAAGCTCAAGCATCGTAGGCTGAT
NONE
Os.52021.1.S1_at--304--5471Chr11:26985526..26985550 (25 bp)
GAACTCTGAGCCGACATGAACGCAA
NONE
Os.52021.1.S1_at--239--3011Chr11:26985454..26985478 (25 bp)
AATGCATGGGTCGATGGCCGCTGTT
NONE
Os.52021.1.S1_at--402--7471Chr11:26985398..26985422 (25 bp)
GTGTGATACATTTACTTCCTTTCCC
NONE
Os.52021.1.S1_at--924--3671Chr11:26985380..26985404 (25 bp)
CTTTCCCTCTGAGATAGGCGTCAAT
NONE
Target Sequence 
GATTCTACCAGTTCAGTGTGGGCACGCAAGCTGAGCACACATGTATAGTACATAAGTACATTTGGGGATCGAAGGAGCTC
GTGCTGCAACAGTAATAACATGATCATGAGGAGATCAGACGGCGACCAAGATGTAGACGAATTAAACATGACATCACATT
TTTGTTCTCTCCCCTCGTAAGTGCGTACAACTCGGCGGTGCATTAATACAGTACTACTACACTACTACTACAAGTCAAGT
AGACTCCTGTTCGTTGTACTACGTGGTCACCGGAATTAGCAGGGGCAGGCAGAGTCCACCATGATCAGGAAGCTCAAGCA
TCGTAGGCTGATGAACTCTGAGCCGACATGAACGCAACCAAGCAAAGCAGATCAGTGTGCATTGCAGGTCGACGATCGAC
GTCGAATGCATGGGTCGATGGCCGCTGTTTTCATTGGGGTCGTTGTTTGCTTGAGATAGAGTGTGATACATTTACTTCCT
TTCCCTCTGAGATAGGCGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis