Browse Element(s) Details


Os.20982.1.S1_at

Description gb:AK120619.1
DB_XREF= gi:37990242
TID=Os.20982.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152C07, full insert sequence.
FL= gb:AK120619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4540011/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45390OsAffx.31490.1.S1_at11/1111+26960793..26968059von Willebrand factor type A domain containing protein
LOC_Os11g45400Os.20982.1.S1_at11/1111+26980112..26983462Acyltransferase family protein, expressed
LOC_Os11g45400OsAffx.32071.1.S1_x_at2/1111+26980112..26983462Acyltransferase family protein, expressed
LOC_Os11g45410OsAffx.31491.1.S1_x_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410OsAffx.31491.1.S1_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410Os.52021.1.S1_at4/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45420NANA11+26992018..26994884retrotransposon protein, putative, unclassified
LOC_Os11g45430OsAffx.22272.1.S1_at3/1111+26996392..26996955transposon protein, putative, unclassified
LOC_Os11g45440OsAffx.199.1.S1_at1/1111+27006026..27007478retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20982.1.S1_at--859--7211Chr11:26982891..26982915 (25 bp)
GTCGACACGGCGATGTTCTACGCGA
LOC_Os11g45400
Os.20982.1.S1_at--287--1951Chr11:26982897..26982921 (25 bp)
ACGGCGATGTTCTACGCGACGACGG
LOC_Os11g45400
Os.20982.1.S1_at--859--4051Chr11:26982967..26982991 (25 bp)
CGAGGACGTGCTACGCCGTGCAGTT
LOC_Os11g45400
Os.20982.1.S1_at--168--3731Chr11:26982977..26983001 (25 bp)
CTACGCCGTGCAGTTCCTGGAGAGG
LOC_Os11g45400
Os.20982.1.S1_at--787--1911Chr11:26983045..26983069 (25 bp)
ACGTGGCCAACCTCGTGCAGAGGAG
LOC_Os11g45400
Os.20982.1.S1_at--773--1131Chr11:26983241..26983265 (25 bp)
AGTTCTAGATAGATTTCGGTTGTTC
LOC_Os11g45400
Os.20982.1.S1_at--354--10311Chr11:26983288..26983312 (25 bp)
TTATGTTGCTGGGTAGTTTAATTTG
LOC_Os11g45400
Os.20982.1.S1_at--882--10551Chr11:26983336..26983360 (25 bp)
TTCTTGCTTCAGTTTGGCTGGTGTG
LOC_Os11g45400
Os.20982.1.S1_at--413--6871Chr11:26983347..26983371 (25 bp)
GTTTGGCTGGTGTGTTCATCAGGTT
LOC_Os11g45400
Os.20982.1.S1_at--122--6751Chr11:26983360..26983384 (25 bp)
GTTCATCAGGTTGATTTCTTCTGTG
LOC_Os11g45400
Os.20982.1.S1_at--975--9611Chr11:26983435..26983459 (25 bp)
TCAAGGAGCTTGTAGAGAAAGTACT
LOC_Os11g45400
Target Sequence 
GTCGACACGGCGATGTTCTACGCGACGACGGCCGGCGGGCTCAAGTGCCTGGACCCGCTCTACTACATCGCCAACCCGAG
GACGTGCTACGCCGTGCAGTTCCTGGAGAGGGTGGACACGTCGCCGGCGAGGGAGCGGAGGGCGCCGTCCACCGACGTGG
CCAACCTCGTGCAGAGGAGGATGGGCGACGCGCTCGGCTACCGCTGCACCATGCTCACCAGGAAGGACAAGTACCTCATG
CTCGCCGGCAACGATGGCGTCGTCAACACCACCCAAGACAACCACTCTGCTCCGGGGAAGAAGAAGATGCAATAATCATG
AATTAGATTAGCCAAAAAAGTTCTCAAAAAAGTTCTAGATAGATTTCGGTTGTTCTTTTATCTTTTTAATTATTTTTTTA
TGTTGCTGGGTAGTTTAATTTGGTGTGTGTTTATANCTGTATTTCNTTCTTGCTTCAGTTTGGCTGGTGTGTTCATCAGG
TTGATTTCTTCTGTGTGTNTTTNANTCAAANTTAATGATTGTATAGAAACAACAAGAAGCTGGCACCATCAAGGAGCTTG
TAGAGAAAGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis