Browse Element(s) Details


OsAffx.31491.1.S1_x_at

Description tigr:9639.m04223
TID=OsAffx.31491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F3O9.28
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4541010/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45390OsAffx.31490.1.S1_at11/1111+26960793..26968059von Willebrand factor type A domain containing protein
LOC_Os11g45400Os.20982.1.S1_at11/1111+26980112..26983462Acyltransferase family protein, expressed
LOC_Os11g45400OsAffx.32071.1.S1_x_at2/1111+26980112..26983462Acyltransferase family protein, expressed
LOC_Os11g45410OsAffx.31491.1.S1_x_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410OsAffx.31491.1.S1_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410Os.52021.1.S1_at4/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45420NANA11+26992018..26994884retrotransposon protein, putative, unclassified
LOC_Os11g45430OsAffx.22272.1.S1_at3/1111+26996392..26996955transposon protein, putative, unclassified
LOC_Os11g45440OsAffx.199.1.S1_at1/1111+27006026..27007478retrotransposon protein, putative, unclassified
LOC_Os11g45450OsAffx.19391.1.S1_at11/1111+27012632..27013159hypothetical protein
LOC_Os11g45460OsAffx.31492.1.S1_at11/1111+27015003..27016551hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31491.1.S1_x_at--902--271Chr11:26988289..26988313 (25 bp)
ATATGGCCTTATCGTTGTCCCAGAA
LOC_Os11g45410
OsAffx.31491.1.S1_x_at--824--7951Chr11:26987600..26987624 (25 bp)
GGATCAGCAGTTAACACCTCTAGTA
LOC_Os11g45410
OsAffx.31491.1.S1_x_at--747--6331Chr11:26987571..26987594 (24 bp)
GATGCTTGTTTGGAACCTTCGATGT
LOC_Os11g45410
OsAffx.31491.1.S1_x_at--1044--451NONE
ATCTCTTTGGTGATCTCTGGTCGCA
NONE
OsAffx.31491.1.S1_x_at--247--5411Chr11:26986304..26986328 (25 bp)
GAAGCGCGGCAGTTCAATTATCCTG
LOC_Os11g45410
OsAffx.31491.1.S1_x_at--816--3131Chr11:26986289..26986313 (25 bp)
AATTATCCTGGACGAGCGCCGTGGT
LOC_Os11g45410
OsAffx.31491.1.S1_x_at--572--7251Chr11:26986263..26986287 (25 bp)
GTCCTGGCAGTTCAATCACCGAAAG
LOC_Os11g45410
OsAffx.31491.1.S1_x_at--844--8951Chr11:26985861..26985885 (25 bp)
TGACATCACATTTTTGTTCTCTCCC
LOC_Os11g45410
OsAffx.31491.1.S1_x_at--1116--711Chr11:26985754..26985778 (25 bp)
ATGATTATAGATTCATGGCCCATGA
LOC_Os11g45410
OsAffx.31491.1.S1_x_at--406--8471Chr11:26985739..26985763 (25 bp)
TGGCCCATGATGATAGATTGCTTTG
LOC_Os11g45410
OsAffx.31491.1.S1_x_at--399--6591Chr11:26985724..26985748 (25 bp)
GATTGCTTTGCAGCGTATGGGCTAA
LOC_Os11g45410
Target Sequence 
ATATGGCCTTATCGTTGTCCCAGAAGGATCTACACAAGGATCAGCAGTTAACACCTCTAGTAGCATTGATGCTTGTTTGG
AACCTTCGATGTATAATCATCTCTTTGGTGATCTCTGGTCGCAGCAGAAGCGCGGCAGTTCAATTATCCTGGACGAGCGC
CGTGGTGGTCCTGGCAGTTCAATCACCGAAAGGAGACAGTACGAGCAAGAAACAACTGGTTTCATCAAAGATCATGAGGA
GATCAGACGGCGACCAAGATGTAGACGAATTAAACATGACATCACATTTTTGTTCTCTCCCCTCATCATGGTCCATGATT
ATAGATTCATGGCCCATGATGATAGATTGCTTTGCAGCGTATGGGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31491.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis