Browse Element(s) Details


OsAffx.31492.1.S1_at

Description tigr:9639.m04228
TID=OsAffx.31492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4546011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45410OsAffx.31491.1.S1_x_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410OsAffx.31491.1.S1_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410Os.52021.1.S1_at4/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45420NANA11+26992018..26994884retrotransposon protein, putative, unclassified
LOC_Os11g45430OsAffx.22272.1.S1_at3/1111+26996392..26996955transposon protein, putative, unclassified
LOC_Os11g45440OsAffx.199.1.S1_at1/1111+27006026..27007478retrotransposon protein, putative, unclassified
LOC_Os11g45450OsAffx.19391.1.S1_at11/1111+27012632..27013159hypothetical protein
LOC_Os11g45460OsAffx.31492.1.S1_at11/1111+27015003..27016551hypothetical protein
LOC_Os11g45470NANA11+27023183..27023653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45480Os.46306.1.S1_x_at2/1111+27024226..27026514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45490NANA11+27029019..27031973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45500NANA11+27035278..27035715retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31492.1.S1_at--722--911Chr11:27015405..27015429 (25 bp)
AGGCTTTAGCCCTAACCATAGCAAA
LOC_Os11g45460
OsAffx.31492.1.S1_at--820--6451Chr11:27015544..27015568 (25 bp)
GATAACTGGCTTGGACATTACCTCA
LOC_Os11g45460
OsAffx.31492.1.S1_at--740--991Chr11:27015570..27015594 (25 bp)
CGGCTAACCACATGAACCTGAACTC
LOC_Os11g45460
OsAffx.31492.1.S1_at--445--6251Chr11:27015633..27015657 (25 bp)
GATGGTCAGGGTTCATTTCTGCTAA
LOC_Os11g45460
OsAffx.31492.1.S1_at--672--10091Chr11:27015658..27015682 (25 bp)
TATGGGCCAGGGATCTGTTAACCCC
LOC_Os11g45460
OsAffx.31492.1.S1_at--356--5951Chr11:27015686..27015710 (25 bp)
GAGCACACAGCCTATCTGTTAGTGT
LOC_Os11g45460
OsAffx.31492.1.S1_at--474--9171Chr11:27016286..27016310 (25 bp)
TGCCCTTTCACCCAGAAGCAAGATT
LOC_Os11g45460
OsAffx.31492.1.S1_at--76--6531Chr11:27016307..27016331 (25 bp)
GATTTGTTCCTGCACTAGAGCTAAA
LOC_Os11g45460
OsAffx.31492.1.S1_at--831--9492Chr11:27016370..27016394 (25 bp)
TCTCACCGGCTTTTATAGGCGGCGA
LOC_Os11g45460
OsAffx.31492.1.S1_at--1010--4691Chr11:27016451..27016475 (25 bp)
GCGGCGCGTGTCGATTTTCAAATGG
LOC_Os11g45460
OsAffx.31492.1.S1_at--311--9651Chr11:27016490..27016514 (25 bp)
TCAGTGGTCGGCGTTGGCTCACAGC
LOC_Os11g45460
Target Sequence 
AGGCTTTAGCCCTAACCATAGCAAATTCGGCTAAAGATGAACCCTTGATAGCTTCTGCAGCCTATTTCTGGTCCAACACC
CTTAATGCTTTTATGTTCAACCAAGGGCCGATGACCCCTACTCTGCTTGACATCACAATGATAACTGGCTTGGACATTAC
CTCATCGGCTAACCACATGAACCTGAACTCCAAGAACAAATTTGATTTCAAGACTAAGAGTATAGGAGGATGGTCAGGGT
TCATTTCTGCTAATATGGGCCAGGGATCTGTTAACCCCCGAGAGCACACAGCCTATCTGTTAGTGTGGCTAGAAAAGATC
AAACCAACTAGCATGCCCTTTCACCCAGAAGCAAGATTTGTTCCTGCACTAGAGCTAAACAGATCTCTCAAGATTTTTGA
TGGGGAAAATAAGGGGCTCTCACCGGCTTTTATAGGCGGCGAAGGCGGCGGAGGGAGAGAAGCCGATGACAGCACGGCGC
GGCTTTGGGAGAGAGGCGGCGGCGCGTGTCGATTTTCAAATGGGCGGCAATGGCGGCTCAGTGGTCGGCGTTGGCTCACA
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis