Browse Element(s) Details


OsAffx.31488.1.S1_at

Description tigr:9639.m04218
TID=OsAffx.31488.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4536010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45320OsAffx.7419.1.S1_at11/1111+26909932..26913251hypothetical protein
LOC_Os11g45330OsAffx.19389.1.S1_at11/1111+26920969..26923753NB-ARC domain containing protein, expressed
LOC_Os11g45339NANA11+26925390..26925831NA
LOC_Os11g45350OsAffx.31487.2.S1_at11/1111+26928363..26930224hypothetical protein
LOC_Os11g45350OsAffx.31487.1.S1_at4/1111+26928363..26930224hypothetical protein
LOC_Os11g45360OsAffx.31488.1.S1_at10/1111+26930803..26931275hypothetical protein
LOC_Os11g45370NANA11+26935213..26935626hypothetical protein
LOC_Os11g45380OsAffx.31489.1.S1_at10/1111+26943016..26945985hypothetical protein
LOC_Os11g45380OsAffx.21975.1.S1_x_at1/1111+26943016..26945985hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31488.1.S1_at--45--10551Chr11:26931206..26931230 (25 bp)
TTCATGCTTCTTCTGATCGTGGCAG
LOC_Os11g45360
OsAffx.31488.1.S1_at--209--511Chr11:26931191..26931215 (25 bp)
ATCGTGGCAGATTCCACCTTCTCAT
LOC_Os11g45360
OsAffx.31488.1.S1_at--97--1751Chr11:26931176..26931200 (25 bp)
ACCTTCTCATCCTGCTATGCATTAA
LOC_Os11g45360
OsAffx.31488.1.S1_at--1072--10031NONE
TATGCATTAACACCTAGACAAACGT
NONE
OsAffx.31488.1.S1_at--121--5631Chr11:26930963..26930987 (25 bp)
GACAAACGTGCAATGACCTAGGAGA
LOC_Os11g45360
OsAffx.31488.1.S1_at--282--1751Chr11:26930948..26930972 (25 bp)
ACCTAGGAGATTTAGCGTGCACTGA
LOC_Os11g45360
OsAffx.31488.1.S1_at--1138--9991Chr11:26930936..26930960 (25 bp)
TAGCGTGCACTGACGAGACGTGCAA
LOC_Os11g45360
OsAffx.31488.1.S1_at--716--5231Chr11:26930889..26930913 (25 bp)
GAATACTACTGCAAGCCAGGCGTCA
LOC_Os11g45360
OsAffx.31488.1.S1_at--1083--9671Chr11:26930867..26930891 (25 bp)
TCACCCCTACGGTATGCTGCTGTAT
LOC_Os11g45360
OsAffx.31488.1.S1_at--599--671Chr11:26930844..26930868 (25 bp)
ATGAACGTCACAGCATCAGTTCCCA
LOC_Os11g45360
OsAffx.31488.1.S1_at--1110--1531Chr11:26930833..26930857 (25 bp)
AGCATCAGTTCCCAGTGGTGTCAAG
LOC_Os11g45360
Target Sequence 
TTCATGCTTCTTCTGATCGTGGCAGATTCCACCTTCTCATCCTGCTATGCATTAACACCTAGACAAACGTGCAATGACCT
AGGAGATTTAGCGTGCACTGACGAGACGTGCAAGAAGATATACGGAGACAGATTAGAATACTACTGCAAGCCAGGCGTCA
CCCCTACGGTATGCTGCTGTATGAACGTCACAGCATCAGTTCCCAGTGGTGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis