Browse Element(s) Details


OsAffx.19389.1.S1_at

Description tigr:9639.m04215
TID=OsAffx.19389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4533011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45280OsAffx.19386.1.S1_at10/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45280Os.18506.1.S1_at9/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45290Os.16043.1.S1_at11/1111+26901200..26903186expressed protein
LOC_Os11g45320OsAffx.7419.1.S1_at11/1111+26909932..26913251hypothetical protein
LOC_Os11g45330OsAffx.19389.1.S1_at11/1111+26920969..26923753NB-ARC domain containing protein, expressed
LOC_Os11g45339NANA11+26925390..26925831NA
LOC_Os11g45350OsAffx.31487.2.S1_at11/1111+26928363..26930224hypothetical protein
LOC_Os11g45350OsAffx.31487.1.S1_at4/1111+26928363..26930224hypothetical protein
LOC_Os11g45360OsAffx.31488.1.S1_at10/1111+26930803..26931275hypothetical protein
LOC_Os11g45370NANA11+26935213..26935626hypothetical protein
LOC_Os11g45380OsAffx.31489.1.S1_at10/1111+26943016..26945985hypothetical protein
LOC_Os11g45380OsAffx.21975.1.S1_x_at1/1111+26943016..26945985hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19389.1.S1_at--52--10271Chr11:26923154..26923178 (25 bp)
TTTGAAGACCTCTGCGAGTCCCTAT
LOC_Os11g45330
OsAffx.19389.1.S1_at--580--6151Chr11:26923229..26923253 (25 bp)
GAGGTCCTCCAATTGAATGGTCTGA
LOC_Os11g45330
OsAffx.19389.1.S1_at--736--951Chr11:26923309..26923333 (25 bp)
AGGACTGCTGTCGTGTGCACCTGAA
LOC_Os11g45330
OsAffx.19389.1.S1_at--559--3471Chr11:26923335..26923359 (25 bp)
CAGGGAGTCACTCATTGTGTTCATT
LOC_Os11g45330
OsAffx.19389.1.S1_at--666--8971Chr11:26923456..26923480 (25 bp)
TGAACATGTGGTTTTCCTCCCAGGA
LOC_Os11g45330
OsAffx.19389.1.S1_at--463--991Chr11:26923477..26923501 (25 bp)
AGGATGGTTCCCTAGGCTCAAGACA
LOC_Os11g45330
OsAffx.19389.1.S1_at--670--8331Chr11:26923533..26923557 (25 bp)
GGCTGAAGATACACCAAGGCTCCAT
LOC_Os11g45330
OsAffx.19389.1.S1_at--117--9751Chr11:26923581..26923605 (25 bp)
TAATAAACCTCCGTGGCATGACAGA
LOC_Os11g45330
OsAffx.19389.1.S1_at--93--6911Chr11:26923645..26923669 (25 bp)
GTATCTGTACTTCCTGGAGATCACT
LOC_Os11g45330
OsAffx.19389.1.S1_at--665--1271Chr11:26923662..26923686 (25 bp)
AGATCACTTGGGACTTCTTCATGGC
LOC_Os11g45330
OsAffx.19389.1.S1_at--1155--6671Chr11:26923687..26923711 (25 bp)
GTTGCGCCGCTCTAGAATTGGCAGT
LOC_Os11g45330
Target Sequence 
TTTGAAGACCTCTGCGAGTCCCTATGTCAGATGGAATATCTTTCCTTGTTAAACATCGCAGCAAGTGATGAGGAAGAGGT
CCTCCAATTGAATGGTCTGAAGTGGTTGCATCCAAACGTTAAAAAGCTAAGATTGATTGGGCGATTGGCACAAACAGGAC
TGCTGTCGTGTGCACCTGAAGCAGGGAGTCACTCATTGTGTTCATTATGTCTATTTTGGTCACAGTTAGCAGAGGACCCA
CTGCCATCCCTGTCTCGGTGGTCGAATTTGACGGACTTTAGGCTGACGAGAGCATATCTCGTTGAACATGTGGTTTTCCT
CCCAGGATGGTTCCCTAGGCTCAAGACACTCTATTTGGTAGACATGCCTAATCTGAAGAGGCTGAAGATACACCAAGGCT
CCATAACAAGCCTGGAGGAACTACATCTAATAAACCTCCGTGGCATGACAGAGGTCCCATCTGACATCATCTTCCTCCTG
CCCACCCTCAAGTATCTGTACTTCCTGGAGATCACTTGGGACTTCTTCATGGCGTTGCGCCGCTCTAGAATTGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis