Browse Element(s) Details


OsAffx.19386.1.S1_at

Description tigr:9639.m04208
TID=OsAffx.19386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative; 47231-50634
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4528010/11PAS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45240Os.15559.1.A1_at2/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240OsAffx.7410.1.S1_at1/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45250Os.15559.1.A1_at11/1111+26876724..26881576Ribonucleases P/MRP protein subunit POP1 containing protein, expressed
LOC_Os11g45260OsAffx.19385.1.S1_at11/1111+26883303..26883578hypothetical protein
LOC_Os11g45270Os.21800.1.S1_at1/1111+26887614..26888330hypothetical protein
LOC_Os11g45280OsAffx.19386.1.S1_at10/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45280Os.18506.1.S1_at9/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45290Os.16043.1.S1_at11/1111+26901200..26903186expressed protein
LOC_Os11g45320OsAffx.7419.1.S1_at11/1111+26909932..26913251hypothetical protein
LOC_Os11g45330OsAffx.19389.1.S1_at11/1111+26920969..26923753NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0004672molecular_functionprotein kinase activity
GO:0004871molecular_functionsignal transducer activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19386.1.S1_at--1119--6891Chr11:26896082..26896106 (25 bp)
GTATCATGCTCTGTGGTATGGTTCG
LOC_Os11g45280
OsAffx.19386.1.S1_at--78--5671Chr11:26896230..26896254 (25 bp)
GACATGATACTCACCTTCAGGCAAG
LOC_Os11g45280
OsAffx.19386.1.S1_at--72--2991Chr11:26896602..26896626 (25 bp)
AATGTGATACTCTTCATGGGTGCAG
LOC_Os11g45280
OsAffx.19386.1.S1_at--97--811Chr11:26896617..26896641 (25 bp)
ATGGGTGCAGTTGCGTCTCTCCAAC
LOC_Os11g45280
OsAffx.19386.1.S1_at--830--3251Chr11:26896638..26896662 (25 bp)
CAACGACTTTGCATTGTTACGGAGT
LOC_Os11g45280
OsAffx.19386.1.S1_at--263--10171NONE
TTACGGAGTTTCTGCCACGAGGGAG
NONE
OsAffx.19386.1.S1_at--828--4391Chr11:26897306..26897325 (20 bp)
GCCACGAGGGAGTTTGTTTCGCTTA
LOC_Os11g45280
OsAffx.19386.1.S1_at--547--2671Chr11:26897344..26897368 (25 bp)
AAGCTGGATCCAAGACGGCGAGTTC
LOC_Os11g45280
OsAffx.19386.1.S1_at--980--5731Chr11:26897357..26897381 (25 bp)
GACGGCGAGTTCACATGGCTATAGA
LOC_Os11g45280
OsAffx.19386.1.S1_at--833--4171Chr11:26897994..26898018 (25 bp)
CCCACCTATTGTCCATCGTGATTTA
LOC_Os11g45280
OsAffx.19386.1.S1_at--363--8571Chr11:26898237..26898261 (25 bp)
TGGATTCTCCGGACTGACAAGACTT
LOC_Os11g45280
Target Sequence 
GTATCATGCTCTGTGGTATGGTTCGGATGTGGCAGTTAAAGTATTCTCCAAATATGAATACTCAGAAGACATGATACTCA
CCTTCAGGCAAGAGGTAGCATTGATGAAGAAACTACGCCACCCCAATGTGATACTCTTCATGGGTGCAGTTGCGTCTCTC
CAACGACTTTGCATTGTTACGGAGTTTCTGCCACGAGGGAGTTTGTTTCGCTTACTTCAAAAGAATGCTGGCAAGCTGGA
TCCAAGACGGCGAGTTCACATGGCTATAGACATTGCAAGAGGCATGAATTATCTCCACAATTCCAGCCCACCTATTGTCC
ATCGTGATTTAAAATCATCAAACCTTTTGGTCGATAAGAACTGGACTGTTAAGTAAGTGCAAGCAAGCTCTACTTAATTT
CACATGGATTCTCCGGACTGACAAGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis