Browse Element(s) Details


OsAffx.19385.1.S1_at

Description tigr:9639.m04205
TID=OsAffx.19385.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4526011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45220Os.52846.1.S1_at11/1111+26859994..26861496Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os11g45230OsAffx.21897.5.S1_x_at4/1111+26863725..26866665retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240Os.15559.1.A1_at2/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240OsAffx.7410.1.S1_at1/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45250Os.15559.1.A1_at11/1111+26876724..26881576Ribonucleases P/MRP protein subunit POP1 containing protein, expressed
LOC_Os11g45260OsAffx.19385.1.S1_at11/1111+26883303..26883578hypothetical protein
LOC_Os11g45270Os.21800.1.S1_at1/1111+26887614..26888330hypothetical protein
LOC_Os11g45280OsAffx.19386.1.S1_at10/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45280Os.18506.1.S1_at9/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45290Os.16043.1.S1_at11/1111+26901200..26903186expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19385.1.S1_at--483--8531Chr11:26883337..26883361 (25 bp)
TGGACGGATCCGGTTACGCTGCATG
LOC_Os11g45260
OsAffx.19385.1.S1_at--844--551Chr11:26883344..26883368 (25 bp)
ATCCGGTTACGCTGCATGTGGATCT
LOC_Os11g45260
OsAffx.19385.1.S1_at--709--10471Chr11:26883350..26883374 (25 bp)
TTACGCTGCATGTGGATCTGCCGCT
LOC_Os11g45260
OsAffx.19385.1.S1_at--1159--4751Chr11:26883354..26883378 (25 bp)
GCTGCATGTGGATCTGCCGCTGCCG
LOC_Os11g45260
OsAffx.19385.1.S1_at--1097--4771Chr11:26883372..26883396 (25 bp)
GCTGCCGCACTAGATCTGGTCAGAG
LOC_Os11g45260
OsAffx.19385.1.S1_at--380--6411Chr11:26883384..26883408 (25 bp)
GATCTGGTCAGAGCGGTCGACAGCA
LOC_Os11g45260
OsAffx.19385.1.S1_at--220--2151Chr11:26883403..26883427 (25 bp)
ACAGCAAGGATGTCAGCGTGGCGAT
LOC_Os11g45260
OsAffx.19385.1.S1_at--878--2931Chr11:26883443..26883467 (25 bp)
AAGGCAGCGAGAGACCCATGCAGCT
LOC_Os11g45260
OsAffx.19385.1.S1_at--775--6011Chr11:26883451..26883475 (25 bp)
GAGAGACCCATGCAGCTGATGGCAA
LOC_Os11g45260
OsAffx.19385.1.S1_at--635--5811Chr11:26883455..26883479 (25 bp)
GACCCATGCAGCTGATGGCAAGGAG
LOC_Os11g45260
OsAffx.19385.1.S1_at--818--10011Chr11:26883512..26883536 (25 bp)
TAGCAGCTGGGCATCGACGTCATCT
LOC_Os11g45260
Target Sequence 
TGGACGGATCCGGTTACGCTGCATGTGGATCTGCCGCTGCCGCACTAGATCTGGTCAGAGCGGTCGACAGCAAGGATGTC
AGCGTGGCGATGAGGCTGCGAGGGCAAAGGCAGCGAGAGACCCATGCAGCTGATGGCAAGGAGGCGCAGCTAGGGTGGCG
CGGTGGTCGGGCGGCTAGCAGCTGGGCATCGACGTCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis