Browse Element(s) Details


Os.15559.1.A1_at

Description gb:CB635537
DB_XREF= gi:29630528
DB_XREF=OSIIEb16A19.r
CLONE=OSIIEb16A19
TID=Os.15559.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15559 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_182252.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4525011/11Ribonucleases P/MRP protein subunit POP1 containing protein, expressed
LOC_Os11g452402/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45200NANA11+26849209..26853980retrotransposon protein, putative, unclassified
LOC_Os11g45210OsAffx.31486.1.S1_at11/1111+26855242..26856382expressed protein
LOC_Os11g45220Os.52846.1.S1_at11/1111+26859994..26861496Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os11g45230OsAffx.21897.5.S1_x_at4/1111+26863725..26866665retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240Os.15559.1.A1_at2/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240OsAffx.7410.1.S1_at1/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45250Os.15559.1.A1_at11/1111+26876724..26881576Ribonucleases P/MRP protein subunit POP1 containing protein, expressed
LOC_Os11g45260OsAffx.19385.1.S1_at11/1111+26883303..26883578hypothetical protein
LOC_Os11g45270Os.21800.1.S1_at1/1111+26887614..26888330hypothetical protein
LOC_Os11g45280OsAffx.19386.1.S1_at10/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45280Os.18506.1.S1_at9/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45290Os.16043.1.S1_at11/1111+26901200..26903186expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15559.1.A1_at--1002--2392Chr11:26877318..26877342 (25 bp)
AAAAATGGGAACTCCAGCTCCCTCA
LOC_Os11g45250
Os.15559.1.A1_at--509--9311Chr11:26877300..26877324 (25 bp)
TCCCTCAATCCCATGTAAGTTCTTA
LOC_Os11g45250
Os.15559.1.A1_at--92--9791Chr11:26877285..26877309 (25 bp)
TAAGTTCTTATTTCTCTTGGCTGGA
LOC_Os11g45250
Os.15559.1.A1_at--380--192Chr11:26877276..26877300 (25 bp)
ATTTCTCTTGGCTGGATCCTAGCAC
LOC_Os11g45250
Os.15559.1.A1_at--503--7971Chr11:26877263..26877287 (25 bp)
GGATCCTAGCACCAGCAATCTCCAG
LOC_Os11g45250
Os.15559.1.A1_at--381--9191Chr11:26877237..26877261 (25 bp)
TGCCAAACGGCGATTCTACACGAAA
LOC_Os11g45250
Os.15559.1.A1_at--154--931Chr11:26877213..26877237 (25 bp)
AGGCATTCAGATGGCCGATAGGCTT
LOC_Os11g45250
Os.15559.1.A1_at--1147--5372Chr11:26877033..26877057 (25 bp)
GAAGCAAAGCTTCTCGCGGTGTTGA
LOC_Os11g45250
Os.15559.1.A1_at--617--2751Chr11:26876969..26876993 (25 bp)
AAGACATCTGTGTCCTTGTAAGGAA
LOC_Os11g45250
Os.15559.1.A1_at--522--1272Chr11:26876940..26876964 (25 bp)
AGATCAGCGGCATACCGACGAGCAC
LOC_Os11g45250
Os.15559.1.A1_at--948--2151Chr11:26876807..26876831 (25 bp)
ACAGCTGTCTGATTCATGTTCGAGG
LOC_Os11g45250
Target Sequence 
AAAAATGGGAACTCCAGCTCCCTCAATCCCATGTAAGTTCTTATTTCTCTTGGCTGGATCCTAGCACCAGCAATCTCCAG
CTGCCAAACGGCGATTCTACACGAAAGGCATTCAGATGGCCGATAGGCTTCNTCACGACNGGTTTTGTCCATGGAAGTAG
TGGGCAAGATGCTGTTGCAGTTGCCTTCTGCGAAGCAAAGCTTCTCGCGGTGTTGAGGCGGCAGCAATGGAGGACACATG
AAAGTCTGAAGCGCNAAGACATCTGTGTCCTTGTAAGGAATGCAAGATCAGCGGCATACCGACGAGCACTCGCAACNATT
GTCCTGGAGCAGCAAGAGGATGACCTTAAGTTTCTNTAGTCTGTAAACCTTAAGCTGCTTANTTATCNATGTTGTAATTT
TTTGTTCAGAATCTTTTACAGCTGTCTGATTCATGTTCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15559.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis