Browse Element(s) Details


Os.16043.1.S1_at

Description gb:AK108189.1
DB_XREF= gi:32993398
TID=Os.16043.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-B12, full insert sequence.
FL= gb:AK108189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4529011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45250Os.15559.1.A1_at11/1111+26876724..26881576Ribonucleases P/MRP protein subunit POP1 containing protein, expressed
LOC_Os11g45260OsAffx.19385.1.S1_at11/1111+26883303..26883578hypothetical protein
LOC_Os11g45270Os.21800.1.S1_at1/1111+26887614..26888330hypothetical protein
LOC_Os11g45280OsAffx.19386.1.S1_at10/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45280Os.18506.1.S1_at9/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45290Os.16043.1.S1_at11/1111+26901200..26903186expressed protein
LOC_Os11g45320OsAffx.7419.1.S1_at11/1111+26909932..26913251hypothetical protein
LOC_Os11g45330OsAffx.19389.1.S1_at11/1111+26920969..26923753NB-ARC domain containing protein, expressed
LOC_Os11g45339NANA11+26925390..26925831NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16043.1.S1_at--326--1431Chr11:26902650..26902674 (25 bp)
AGAAACTGTGGTTCTCCCTGCAGAA
LOC_Os11g45290
Os.16043.1.S1_at--819--7851Chr11:26902707..26902731 (25 bp)
GGTTTCTGTTGACCAGCTCAATGAA
LOC_Os11g45290
Os.16043.1.S1_at--135--5491Chr11:26902729..26902753 (25 bp)
GAACTTGGCCTCAGTATTTCGATTG
LOC_Os11g45290
Os.16043.1.S1_at--98--31Chr11:26902750..26902774 (25 bp)
ATTGGCCGAGGTGTATGCACCGTCA
LOC_Os11g45290
Os.16043.1.S1_at--270--2891Chr11:26902978..26903002 (25 bp)
AAGGGATCTGGAGTTTTCTCTGAAT
LOC_Os11g45290
Os.16043.1.S1_at--204--6851Chr11:26903066..26903090 (25 bp)
GTTTGACCTTGTCTTTTACCACTGT
LOC_Os11g45290
Os.16043.1.S1_at--250--10331Chr11:26903092..26903116 (25 bp)
TTTAAGTTCCTGTAGCCTGTTGAGC
LOC_Os11g45290
Os.16043.1.S1_at--724--6651Chr11:26903110..26903134 (25 bp)
GTTGAGCTGTTCATATCCATCGACT
LOC_Os11g45290
Os.16043.1.S1_at--949--252Chr11:26903122..26903146 (25 bp)
ATATCCATCGACTTGCAATTGCCAT
LOC_Os11g45290
Os.16043.1.S1_at--134--10691Chr11:26903140..26903164 (25 bp)
TTGCCATTTCAGTTTCAGTGTTCCT
LOC_Os11g45290
Os.16043.1.S1_at--182--9271Chr11:26903161..26903185 (25 bp)
TCCTGCCCTGCTGATTTATTGGTGA
LOC_Os11g45290
Target Sequence 
AGAAACTGTGGTTCTCCCTGCAGAAGTGTGGTNNNNGCCGGNGATTGATGAAAACTTGGTTTCTGTTGACCAGCTCAATG
AACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGTCACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCG
CGTAGATCAGGTGGAGTCTATGAGGTGGAATTCCTCAAGGTTCCCCTTAATTAGCACCAGAAATTCCTTGCTGCAGTATC
AGTTGGGGTAGTCAGACTCGTATGATGATATTGCCTACTATATGCAATGCTTGTTGGGTTGGAACTTAAGTTGGATCTTT
CAGTAGTTAAGGGATCTGGAGTTTTCTCTGAATGTAAAAACTAAAAAGTGAAAGAAGGAGCTGCCTGTGAGCAGAACTGA
GGATTTTACCATGTTGGTTTGACCTTGTCTTTTACCACTGTTTTTAAGTTCCTGTAGCCTGTTGAGCTGTTCATATCCAT
CGACTTGCAATTGCCATTTCAGTTTCAGTGTTCCTGCCCTGCTGATTTATTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis