Browse Element(s) Details


Os.18506.1.S1_at

Description gb:CB679017
DB_XREF= gi:29682742
DB_XREF=OSJNEf02A10.r
CLONE=OSJNEf02A10
TID=Os.18506.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18506 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564913.1 (A.thaliana) putative protein kinase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g452809/11PAS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45240Os.15559.1.A1_at2/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240OsAffx.7410.1.S1_at1/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45250Os.15559.1.A1_at11/1111+26876724..26881576Ribonucleases P/MRP protein subunit POP1 containing protein, expressed
LOC_Os11g45260OsAffx.19385.1.S1_at11/1111+26883303..26883578hypothetical protein
LOC_Os11g45270Os.21800.1.S1_at1/1111+26887614..26888330hypothetical protein
LOC_Os11g45280OsAffx.19386.1.S1_at10/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45280Os.18506.1.S1_at9/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45290Os.16043.1.S1_at11/1111+26901200..26903186expressed protein
LOC_Os11g45320OsAffx.7419.1.S1_at11/1111+26909932..26913251hypothetical protein
LOC_Os11g45330OsAffx.19389.1.S1_at11/1111+26920969..26923753NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0004672molecular_functionprotein kinase activity
GO:0004871molecular_functionsignal transducer activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18506.1.S1_at--696--3591Chr11:26899076..26899100 (25 bp)
CATTCCAAGCGATGTTGATCCTCAT
LOC_Os11g45280
Os.18506.1.S1_at--69--10791Chr11:26899090..26899114 (25 bp)
TTGATCCTCATTGGGCGTCGATGAT
LOC_Os11g45280
Os.18506.1.S1_at--303--9391Chr11:26899107..26899131 (25 bp)
TCGATGATCGAGAGTTGCTGGGACA
LOC_Os11g45280
Os.18506.1.S1_at--900--1431Chr11:26899289..26899313 (25 bp)
AGAACTGCTAGATCAGCTCCGAGAT
LOC_Os11g45280
Os.18506.1.S1_at--16--6131Chr11:26899370..26899394 (25 bp)
GAGTGTTGACGATTGCTAACTTCAA
LOC_Os11g45280
Os.18506.1.S1_at--826--2971Chr11:26899401..26899425 (25 bp)
AATGGTCCATGTTCAGCTTGTTGCC
LOC_Os11g45280
Os.18506.1.S1_at--212--4931Chr11:26899416..26899440 (25 bp)
GCTTGTTGCCAATATGAGGTCCCAG
LOC_Os11g45280
Os.18506.1.S1_at--550--6151Chr11:26899431..26899455 (25 bp)
GAGGTCCCAGCAGGCCAGCAAAATG
LOC_Os11g45280
Os.18506.1.S1_at--544--4711Chr11:26899660..26899684 (25 bp)
GCTGTATTCACCCTATTAACCATGT
LOC_Os11g45280
Os.18506.1.S1_at--1149--6991NONE
GTACTAGTCCTTGAGATTATCGCGG
NONE
Os.18506.1.S1_at--843--151NONE
ATTATCGCGGAGTTAATCAGTGTCA
NONE
Target Sequence 
CATTCCAAGCGATGTTGATCCTCATTGGGCGTCGATGATCGAGAGTTGCTGGGACAGTGACCCGCAGCGTCGCCCTTCGT
TCCAAGAACTGCTAGATCAGCTCCGAGATCTGCAGAAGCAATACAACTTGCAGGCTCAACTGCAGCGAACTGCAGCTGCC
AAGATGAGTGTTGACGATTGCTAACTTCAAAATCTGAATGGTCCATGTTCAGCTTGTTGCCAATATGAGGTCCCAGCAGG
CCAGCAAAATGGGATTCGNTANGAGTCCAGTCTAACCAAAAAGGGTTCTGAATTCTGAACATTTTGCTACTTTTCTGAAG
AANCTGTGGCAGCAATTGAGTTTGTGCCANAAAAAGATGGTGCATTNGATCTGAANCCTGAAGNTNTGCAACTGCAATTC
AATCAATCTTCCANCAGTGATGACCGATGAAATTTCGGCAGTCATCNAATACAATGCTGTATTCACCCTATTAACCATGT
ACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGNTATTCTGCAANGTACTAGTCCTTGAGATTATCGCGGAGTTAATC
AGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis