Browse Element(s) Details


OsAffx.7419.1.S1_at

Description tigr:9639.m04214
TID=OsAffx.7419.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4532011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45270Os.21800.1.S1_at1/1111+26887614..26888330hypothetical protein
LOC_Os11g45280OsAffx.19386.1.S1_at10/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45280Os.18506.1.S1_at9/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45290Os.16043.1.S1_at11/1111+26901200..26903186expressed protein
LOC_Os11g45320OsAffx.7419.1.S1_at11/1111+26909932..26913251hypothetical protein
LOC_Os11g45330OsAffx.19389.1.S1_at11/1111+26920969..26923753NB-ARC domain containing protein, expressed
LOC_Os11g45339NANA11+26925390..26925831NA
LOC_Os11g45350OsAffx.31487.2.S1_at11/1111+26928363..26930224hypothetical protein
LOC_Os11g45350OsAffx.31487.1.S1_at4/1111+26928363..26930224hypothetical protein
LOC_Os11g45360OsAffx.31488.1.S1_at10/1111+26930803..26931275hypothetical protein
LOC_Os11g45370NANA11+26935213..26935626hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7419.1.S1_at--190--3411Chr11:26910918..26910942 (25 bp)
CAGAGCCCGGAGCAACATTTCCTAG
LOC_Os11g45320
OsAffx.7419.1.S1_at--469--6252Chr11:26910942..26910966 (25 bp)
GATGGTTCATCACAGAAGCTGCTAC
LOC_Os11g45320
OsAffx.7419.1.S1_at--240--2091Chr11:26910972..26910996 (25 bp)
ACATGACCAGCGACAAGAGCATCTT
LOC_Os11g45320
OsAffx.7419.1.S1_at--197--3711Chr11:26911011..26911035 (25 bp)
CTATGGCCGGCCTTGTCATCGACGA
LOC_Os11g45320
OsAffx.7419.1.S1_at--96--3351Chr11:26911067..26911091 (25 bp)
CACGGCATTGGAGCTGTGTACTCAT
LOC_Os11g45320
OsAffx.7419.1.S1_at--732--2071Chr11:26911140..26911164 (25 bp)
ACATTGGCTTAGTTTCTGCTGGTCA
LOC_Os11g45320
OsAffx.7419.1.S1_at--561--7111Chr11:26911161..26911185 (25 bp)
GTCAGCTCACTGCAATTGGTCTCAA
LOC_Os11g45320
OsAffx.7419.1.S1_at--17--771Chr11:26911203..26911227 (25 bp)
ATGTCTGCACCATCACTAGTGCTGA
LOC_Os11g45320
OsAffx.7419.1.S1_at--53--8511Chr11:26912905..26912928 (24 bp)
TGGCATGCAGGAATGGCCGGACCAT
LOC_Os11g45320
OsAffx.7419.1.S1_at--549--9251Chr11:26912947..26912971 (25 bp)
TCCTCATTGTTCTCTCCAACAAGGA
LOC_Os11g45320
OsAffx.7419.1.S1_at--928--2711Chr11:26913002..26913026 (25 bp)
AAGCAGCTGTCCTGTGCTTCAACTT
LOC_Os11g45320
Target Sequence 
CAGAGCCCGGAGCAACATTTCCTAGATGGTTCATCACAGAAGCTGCTACAAACCACATGACCAGCGACAAGAGCATCTTC
TCCGACCTCAAGCCTATGGCCGGCCTTGTCATCGACGACCGTGCCGGCGCCGGCGCAGGGTTGCCGATGCACGGCATTGG
AGCTGTGTACTCATGGGAGGTGGCGCTCCAAGATGTGTGGTATGTGCCGGGGATGAGTGCCTACATTGGCTTAGTTTCTG
CTGGTCAGCTCACTGCAATTGGTCTCAAAACTGAGATTGCAGGAGATGTCTGCACCATCACTAGTGCTGATGGATCTGAA
GTTGGCAAAGGGCGTATGGCATGCAGGAATGGCCGGACCATGCCCGACCACCCTTGTCTTCCTCATTGTTCTCTCCAACA
AGGAGATCCTCCTCATCAACAAATCAACAATGGCAAGCAGCTGTCCTGTGCTTCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis