Browse Element(s) Details


Os.32118.2.S1_x_at

Description gb:NM_191121.1
DB_XREF= gi:34909325
GEN=OSJNBb0021A09.9
TID=Os.32118.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0021A09.9 (OSJNBb0021A09.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0021A09.9 (OSJNBb0021A09.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5357011/11Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g419801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed
LOC_Os01g53530OsAffx.11588.1.S1_at11/111+31072286..31072719hypothetical protein
LOC_Os01g53530Os.38764.1.S1_x_at8/111+31072286..31072719hypothetical protein
LOC_Os01g53540OsAffx.23775.1.S1_at11/111+31074365..31074583hypothetical protein
LOC_Os01g53550Os.30828.1.S1_at7/111+31075148..31076022expressed protein
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein
LOC_Os01g53600Os.53562.1.S1_s_at11/111+31101964..31106121Protein farnesyltransferase beta subunit, putative, expressed
LOC_Os01g53610Os.34170.1.S1_at11/111+31106241..31109574pentatricopeptide, putative, expressed
LOC_Os01g53620OsAffx.23776.1.S1_at11/111+31112951..31114867expressed protein
LOC_Os01g53620Os.9011.1.S1_at10/111+31112951..31114867expressed protein
LOC_Os01g53630Os.42170.1.S1_x_at10/111+31115825..31123367Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32118.2.S1_x_at--102--7311Chr01:31092640..31092664 (25 bp)
GTGCTGCGCCACTGCGCCTACGAGG
LOC_Os01g53570
Os.32118.2.S1_x_at--760--1571Chr01:31092878..31092902 (25 bp)
AGCTCGTCCGTGTCCTTGGCGGCGA
LOC_Os01g53570
Os.32118.2.S1_x_at--888--5072Chr01:31092920..31092944 (25 bp)
GCAGCGCCGAGAGGCTGAGCCTTCT
LOC_Os01g53570
Os.32118.2.S1_x_at--669--1311Chr01:31092929..31092953 (25 bp)
AGAGGCTGAGCCTTCTCAAGAGCGT
LOC_Os01g53570
Os.32118.2.S1_x_at--158--8931Chr01:31092935..31092959 (25 bp)
TGAGCCTTCTCAAGAGCGTGCACGG
LOC_Os01g53570
Os.32118.2.S1_x_at--857--9711Chr01:31092944..31092968 (25 bp)
TCAAGAGCGTGCACGGCTCCGCCTA
LOC_Os01g53570
Os.32118.2.S1_x_at--400--1591Chr01:31092977..31093001 (25 bp)
AGCTCGCGCTGGAGCTCAACTCGCA
LOC_Os01g53570
Os.32118.2.S1_x_at--736--8711Chr01:31093208..31093232 (25 bp)
TGTCGCTGGCCACGTTCGCGTCGCT
LOC_Os01g53570
Os.32118.2.S1_x_at--365--4011Chr01:31093226..31093250 (25 bp)
CGTCGCTGCTGCTCGAGTTCGTGGC
LOC_Os01g53570
Os.32118.2.S1_x_at--897--9411Chr01:31093244..31093268 (25 bp)
TCGTGGCGCGGCTGGACCACCTCGT
LOC_Os01g53570
Os.32118.2.S1_x_at--137--8531Chr01:31093256..31093280 (25 bp)
TGGACCACCTCGTGGATGCCGTCGA
LOC_Os01g53570
Target Sequence 
GTGCTGCGCCACTGCGCCTACGAGGCGCCGGACGGAGTCAGGGAGGCGTTCCGTGCGGAGATCGAGGACGCGACGGCGCA
GGCGGCCGAGCTCGTCCGTGTCCTTGGCGGCGACGTCGACGGCATGACGCGCAGCGCCGAGAGGCTGAGCCTTCTCAAGA
GCGTGCACGGCTCCGCCTACCGCCTCCAGCTCGCGCTGGAGCTCAACTCGCACCTCCTCGTCTCGTCCGGCTCCGTGGCG
GAGGAGATCACGAGCGGCGGCGGCCTCGAGCGCTCGTGCTCGCGGCTGCGCGAGAGCGCGCGGCGGCAGAGGCTGTCGTG
GCCGTCGCGGGAGGCGGACGAGCTGGAGGAGGCGGAGGCCGGCGGCGGATACGCGGCGATGATGGTGAGGGTGCGCGCGC
TGGAGAGCACGGCGGCGCTGTCGCTGGCCACGTTCGCGTCGCTGCTGCTCGAGTTCGTGGCGCGGCTGGACCACCTCGTG
GATGCCGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32118.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis