Browse Element(s) Details


OsAffx.11588.1.S1_at

Description tigr:9629.m05208
TID=OsAffx.11588.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5353011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53480NANA1+31047595..31050103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53500Os.32371.1.S1_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53500Os.32371.2.S1_x_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed
LOC_Os01g53530OsAffx.11588.1.S1_at11/111+31072286..31072719hypothetical protein
LOC_Os01g53530Os.38764.1.S1_x_at8/111+31072286..31072719hypothetical protein
LOC_Os01g53540OsAffx.23775.1.S1_at11/111+31074365..31074583hypothetical protein
LOC_Os01g53550Os.30828.1.S1_at7/111+31075148..31076022expressed protein
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11588.1.S1_at--368--8111Chr01:31072569..31072593 (25 bp)
GGACGCCGCCACACGCGATTGTCAA
LOC_Os01g53530
OsAffx.11588.1.S1_at--1071--4391Chr01:31072576..31072600 (25 bp)
GCCACACGCGATTGTCAACGCTCGT
LOC_Os01g53530
OsAffx.11588.1.S1_at--781--2171Chr01:31072579..31072603 (25 bp)
ACACGCGATTGTCAACGCTCGTCGT
LOC_Os01g53530
OsAffx.11588.1.S1_at--244--1831Chr01:31072581..31072605 (25 bp)
ACGCGATTGTCAACGCTCGTCGTCT
LOC_Os01g53530
OsAffx.11588.1.S1_at--54--4391Chr01:31072637..31072661 (25 bp)
CCAAGCAGGTCATCATCAGCGAGGA
LOC_Os01g53530
OsAffx.11588.1.S1_at--1094--3231Chr01:31072638..31072662 (25 bp)
CAAGCAGGTCATCATCAGCGAGGAT
LOC_Os01g53530
OsAffx.11588.1.S1_at--1152--2711Chr01:31072639..31072663 (25 bp)
AAGCAGGTCATCATCAGCGAGGATC
LOC_Os01g53530
OsAffx.11588.1.S1_at--600--1531Chr01:31072640..31072664 (25 bp)
AGCAGGTCATCATCAGCGAGGATCC
LOC_Os01g53530
OsAffx.11588.1.S1_at--1011--5011Chr01:31072641..31072665 (25 bp)
GCAGGTCATCATCAGCGAGGATCCC
LOC_Os01g53530
OsAffx.11588.1.S1_at--1110--1011Chr01:31072643..31072667 (25 bp)
AGGTCATCATCAGCGAGGATCCCTT
LOC_Os01g53530
OsAffx.11588.1.S1_at--270--7131Chr01:31072645..31072669 (25 bp)
GTCATCATCAGCGAGGATCCCTTCG
LOC_Os01g53530
Target Sequence 
GGACGCCGCCACACGCGATTGTCAACGCTCGTCGTCTCTCCGTAGGGGTGGCGCCGACGCCGCCGCCACCAAGCAGGTCA
TCATCAGCGAGGATCCCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis