Browse Element(s) Details


OsAffx.11589.1.S1_x_at

Description gb:NM_191119.1
DB_XREF= gi:34909321
GEN=OSJNBb0021A09.7
TID=OsAffx.11589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative diphosphonucleotide phosphatase (OSJNBb0021A09.7), mRNA.
PROD=putative diphosphonucleotide phosphatase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5356010/11phosphoesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53500Os.32371.1.S1_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53500Os.32371.2.S1_x_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed
LOC_Os01g53530OsAffx.11588.1.S1_at11/111+31072286..31072719hypothetical protein
LOC_Os01g53530Os.38764.1.S1_x_at8/111+31072286..31072719hypothetical protein
LOC_Os01g53540OsAffx.23775.1.S1_at11/111+31074365..31074583hypothetical protein
LOC_Os01g53550Os.30828.1.S1_at7/111+31075148..31076022expressed protein
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein
LOC_Os01g53600Os.53562.1.S1_s_at11/111+31101964..31106121Protein farnesyltransferase beta subunit, putative, expressed
LOC_Os01g53610Os.34170.1.S1_at11/111+31106241..31109574pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006471biological_processprotein amino acid ADP-ribosylation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003824molecular_functioncatalytic activity
GO:0003950molecular_functionNAD+ ADP-ribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11589.1.S1_x_at--430--8391Chr01:31081520..31081544 (25 bp)
GGCGCAGAATCAAGACCGTGATAAG
LOC_Os01g53560
OsAffx.11589.1.S1_x_at--975--7491Chr01:31082232..31082254 (23 bp)
GTGGTTCACAGCATGGAAGACTCTA
LOC_Os01g53560
OsAffx.11589.1.S1_x_at--390--6231Chr01:31083753..31083777 (25 bp)
GATGGCCTTCAGTCTTCAGCTAAGA
LOC_Os01g53560
OsAffx.11589.1.S1_x_at--275--8831Chr01:31083788..31083812 (25 bp)
TGATTTTGATGGATGCCTCGCCAAA
LOC_Os01g53560
OsAffx.11589.1.S1_x_at--812--8251Chr01:31085221..31085245 (25 bp)
GGCAGCAAGCTGTTGACTCCAAAAT
LOC_Os01g53560
OsAffx.11589.1.S1_x_at--429--2831Chr01:31085278..31085683 (25 bp)
AAGTCCCTATTCAGGTTTTCATAGC
LOC_Os01g53560
OsAffx.11589.1.S1_x_at--1048--5511Chr01:31085701..31085725 (25 bp)
GAAAAACCTTTCCAGATGATCCATT
LOC_Os01g53560
OsAffx.11589.1.S1_x_at--935--5991Chr01:31085761..31085785 (25 bp)
GAGAGCATTTCAATTCGGGAGTTAC
LOC_Os01g53560
OsAffx.11589.1.S1_x_at--190--451Chr01:31086664..31086688 (25 bp)
ATCTTTCTATGTTGGTGATGCCGCT
LOC_Os01g53560
OsAffx.11589.1.S1_x_at--883--1471NONE
AGAATTCGCTAAGGCCATTGGTCTG
NONE
OsAffx.11589.1.S1_x_at--543--8591Chr01:31087746..31087770 (25 bp)
TGGTCTGAAGTTTCACGTTCCTGAA
LOC_Os01g53560
Target Sequence 
GGCGCAGAATCAAGACCGTGATAAGTTGCGGGAGTTGGAGAATTGTAAGAGAGATGGCAATGTGACTGATCAATTGAATG
AACAGAATCTGAAGAAGGAAGTGGTTCACAGCATGGAAGACTCTAAGGGCACTGGAAATAATATCGAAGGTGTTAAGGAT
GATGGCCTTCAGTCTTCAGCTAAGATTGCTGCATTTGATTTTGATGGATGCCTCGCCAAAACCTCAGTCATATTCACCAA
TGAGTCGAACATTGAACGATGGAACAAAAAGCGGCAGCAAGCTGTTGACTCCAAAATTGGGCGTCTTGACAAGTTCATTG
AACGTGTAAAAGTCCCTATTCAGGTTTTCATAGCATGTGGTTTAGGGAAAGGAAAAACCTTTCCAGATGATCCATTTCGA
AAACCAAACACTGGAATGTGGTGGTTGATGAGAGAGCATTTCAATTCGGGAGTTACAGTTGACATGGACAAATCTTTCTA
TGTTGGTGATGCCGCTGGGAGAGAGAATGATCATAGTGATGCAGATAAAGAATTCGCTAAGGCCATTGGTCTGAAGTTTC
ACGTTCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11589.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis