Browse Element(s) Details


OsAffx.21642.1.S1_s_at

Description gb:NM_191122.1
DB_XREF= gi:34909327
GEN=OSJNBb0021A09.10
TID=OsAffx.21642.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0021A09.10 (OSJNBb0021A09.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5359011/113'-5' exonuclease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53530OsAffx.11588.1.S1_at11/111+31072286..31072719hypothetical protein
LOC_Os01g53530Os.38764.1.S1_x_at8/111+31072286..31072719hypothetical protein
LOC_Os01g53540OsAffx.23775.1.S1_at11/111+31074365..31074583hypothetical protein
LOC_Os01g53550Os.30828.1.S1_at7/111+31075148..31076022expressed protein
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein
LOC_Os01g53600Os.53562.1.S1_s_at11/111+31101964..31106121Protein farnesyltransferase beta subunit, putative, expressed
LOC_Os01g53610Os.34170.1.S1_at11/111+31106241..31109574pentatricopeptide, putative, expressed
LOC_Os01g53620OsAffx.23776.1.S1_at11/111+31112951..31114867expressed protein
LOC_Os01g53620Os.9011.1.S1_at10/111+31112951..31114867expressed protein
LOC_Os01g53630Os.42170.1.S1_x_at10/111+31115825..31123367Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21642.1.S1_s_at--716--851Chr01:31099256..31099280 (25 bp)
ATGGCACCTACACGGTGGCGTTCGA
LOC_Os01g53590
OsAffx.21642.1.S1_s_at--426--8371Chr01:31099272..31099296 (25 bp)
GGCGTTCGACGAGGACAAAATCTAC
LOC_Os01g53590
OsAffx.21642.1.S1_s_at--813--2231Chr01:31099289..31099313 (25 bp)
AAATCTACACGACGGTGACGGACTC
LOC_Os01g53590
OsAffx.21642.1.S1_s_at--134--9371Chr01:31099391..31099415 (25 bp)
TCGACGTCGAGTGGAACCCAGCAAG
LOC_Os01g53590
OsAffx.21642.1.S1_s_at--499--1491Chr01:31099410..31099434 (25 bp)
AGCAAGCGGCTTTTGCGCTCTGGGC
LOC_Os01g53590
OsAffx.21642.1.S1_s_at--402--1591Chr01:31099583..31099607 (25 bp)
AGCTGAGGGAGCATTACGACCTGGA
LOC_Os01g53590
OsAffx.21642.1.S1_s_at--1154--1431Chr01:31099613..31099637 (25 bp)
AGAACGCGGTGGACCTGCGCTACCT
LOC_Os01g53590
OsAffx.21642.1.S1_s_at--296--1911Chr01:31099709..31099733 (25 bp)
ACGTGTGGATGGAGAAGCCGCACCA
LOC_Os01g53590
OsAffx.21642.1.S1_s_at--960--8911Chr01:31099742..31099766 (25 bp)
TGAGCGCCTGGGACTCAAGGCAGCT
LOC_Os01g53590
OsAffx.21642.1.S1_s_at--711--9711Chr01:31099756..31099780 (25 bp)
TCAAGGCAGCTGACGCTGGACCAGG
LOC_Os01g53590
OsAffx.21642.1.S1_s_at--144--1731Chr01:31099775..31099799 (25 bp)
ACCAGGTGATGTACGCGTGCGCCGA
LOC_Os01g53590
Target Sequence 
ATGGCACCTACACGGTGGCGTTCGACGAGGACAAAATCTACACGACGGTGACGGACTCCGGCGAGGAGGTCGAGGAGTGG
CTGGACGAGATCGTCCGCATCCACCACCGCCGCCTCGACCACCTCATCGTCGGGCTCGACGTCGAGTGGAACCCAGCAAG
CGGCTTTTGCGCTCTGGGCCCCGTCGCCGTGCTCCAGATCTGCGTCGGCCGCCGCTGCCTCGTCTTCCAGATCATCCACG
CCGACTACGTCCCGGACCAGCTGGGCGACTTCCTCGGCGACGGCCGCTTCACCTTCGTCGGCGTCGGGATCCACGACGAC
GTGGACAAGCTGAGGGAGCATTACGACCTGGAGGTGGAGAACGCGGTGGACCTGCGCTACCTCGCCGCGCAGACGATCGG
GAAGCCGGCGCTGCGGAGCACCGGGCTGCAGGGGTTGGTGTGGGAGGTGATGGACGTGTGGATGGAGAAGCCGCACCACG
TGCGGGTGAGCGCCTGGGACTCAAGGCAGCTGACGCTGGACCAGGTGATGTACGCGTGCGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21642.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis