Browse Element(s) Details


Os.9011.1.S1_at

Description gb:AK062424.1
DB_XREF= gi:32972442
TID=Os.9011.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9011 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0021A09.13 (OSJNBb0021A09.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-G12, full insert sequence.
FL= gb:AK062424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5362010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein
LOC_Os01g53600Os.53562.1.S1_s_at11/111+31101964..31106121Protein farnesyltransferase beta subunit, putative, expressed
LOC_Os01g53610Os.34170.1.S1_at11/111+31106241..31109574pentatricopeptide, putative, expressed
LOC_Os01g53620OsAffx.23776.1.S1_at11/111+31112951..31114867expressed protein
LOC_Os01g53620Os.9011.1.S1_at10/111+31112951..31114867expressed protein
LOC_Os01g53630Os.42170.1.S1_x_at10/111+31115825..31123367Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9011.1.S1_at--652--3211Chr01:31113007..31113031 (25 bp)
CAAGAGAGGTTTAGAGCCCCGTCCA
LOC_Os01g53620
Os.9011.1.S1_at--1128--2371Chr01:31113031..31113055 (25 bp)
AAACTCCAAACCAGCCATGGCGACG
LOC_Os01g53620
Os.9011.1.S1_at--210--8491NONE
TGGCTCTCAGAAGGGTTTGCAACAC
NONE
Os.9011.1.S1_at--848--1051Chr01:31114602..31114626 (25 bp)
AGGGTTTGCAACACCTCTATAACAG
LOC_Os01g53620
Os.9011.1.S1_at--373--351Chr01:31114620..31114644 (25 bp)
ATAACAGGAGTGGTGTTTTGGTCAC
LOC_Os01g53620
Os.9011.1.S1_at--749--7731Chr01:31114631..31114655 (25 bp)
GGTGTTTTGGTCACCACACAAGAAA
LOC_Os01g53620
Os.9011.1.S1_at--275--8591Chr01:31114638..31114662 (25 bp)
TGGTCACCACACAAGAAACTTTTCT
LOC_Os01g53620
Os.9011.1.S1_at--574--4171Chr01:31114674..31114698 (25 bp)
CCCCAGCAGGTTCCAATAACATTAG
LOC_Os01g53620
Os.9011.1.S1_at--39--1651Chr01:31114808..31114832 (25 bp)
AGCGATCATATTCATCACAACTTTG
LOC_Os01g53620
Os.9011.1.S1_at--507--111Chr01:31114817..31114841 (25 bp)
ATTCATCACAACTTTGCAACATATT
LOC_Os01g53620
Os.9011.1.S1_at--893--151Chr01:31114839..31114863 (25 bp)
ATTATGCATTTACCTGTTTCTGTTG
LOC_Os01g53620
Target Sequence 
CAAGAGAGGTTTAGAGCCCCGTCCAAACTCCAAACCAGCCATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCCCTCGCGG
GGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCTCCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCG
GCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGG
GTTGATGCCGCTGCACAGCGCCACTGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATCTTGGGGTTGGC
TCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGGTCACCACACAAGAAACTTTTCTGTTAGCCTTTCC
CCCAGCAGGTTCCAATAACATTAGTTACAAGACTTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAA
ATTTTTTCTCTGCTTAAAACTTATGATGGCCTCATGTGCCAGATGATTGTCCAAGCGATCATATTCATCACAACTTTGCA
ACATATTATGCATTTACCTGTTTCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis