Browse Element(s) Details


Os.32118.1.S1_at

Description gb:AK105965.1
DB_XREF= gi:32991174
TID=Os.32118.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0021A09.9 (OSJNBb0021A09.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E06, full insert sequence.
FL= gb:AK105965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5357011/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed
LOC_Os01g53530OsAffx.11588.1.S1_at11/111+31072286..31072719hypothetical protein
LOC_Os01g53530Os.38764.1.S1_x_at8/111+31072286..31072719hypothetical protein
LOC_Os01g53540OsAffx.23775.1.S1_at11/111+31074365..31074583hypothetical protein
LOC_Os01g53550Os.30828.1.S1_at7/111+31075148..31076022expressed protein
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein
LOC_Os01g53600Os.53562.1.S1_s_at11/111+31101964..31106121Protein farnesyltransferase beta subunit, putative, expressed
LOC_Os01g53610Os.34170.1.S1_at11/111+31106241..31109574pentatricopeptide, putative, expressed
LOC_Os01g53620OsAffx.23776.1.S1_at11/111+31112951..31114867expressed protein
LOC_Os01g53620Os.9011.1.S1_at10/111+31112951..31114867expressed protein
LOC_Os01g53630Os.42170.1.S1_x_at10/111+31115825..31123367Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32118.1.S1_at--328--2391Chr01:31093327..31093351 (25 bp)
AAACTAGCTACCTGACCAGGCCATC
LOC_Os01g53570
Os.32118.1.S1_at--1127--1551Chr01:31093332..31093356 (25 bp)
AGCTACCTGACCAGGCCATCTGGGA
LOC_Os01g53570
Os.32118.1.S1_at--266--891Chr01:31093344..31093368 (25 bp)
AGGCCATCTGGGACGTATCACCAGC
LOC_Os01g53570
Os.32118.1.S1_at--167--491Chr01:31093349..31093373 (25 bp)
ATCTGGGACGTATCACCAGCACGTT
LOC_Os01g53570
Os.32118.1.S1_at--300--7631Chr01:31093353..31093377 (25 bp)
GGGACGTATCACCAGCACGTTTATC
LOC_Os01g53570
Os.32118.1.S1_at--834--6891Chr01:31093358..31093382 (25 bp)
GTATCACCAGCACGTTTATCAACGT
LOC_Os01g53570
Os.32118.1.S1_at--339--10411Chr01:31093373..31093397 (25 bp)
TTATCAACGTGCTAAACCAATACCG
LOC_Os01g53570
Os.32118.1.S1_at--428--3991Chr01:31093380..31093404 (25 bp)
CGTGCTAAACCAATACCGTGTATTT
LOC_Os01g53570
Os.32118.1.S1_at--505--3171Chr01:31093390..31093414 (25 bp)
CAATACCGTGTATTTTACATGGACT
LOC_Os01g53570
Os.32118.1.S1_at--997--3971Chr01:31093396..31093420 (25 bp)
CGTGTATTTTACATGGACTTTAATT
LOC_Os01g53570
Os.32118.1.S1_at--356--11Chr01:31093411..31093435 (25 bp)
GACTTTAATTAGAGGATTGTTTTCA
LOC_Os01g53570
Target Sequence 
AAACTAGCTACCTGACCAGGCCATCTGGGACGTATCACCAGCACGTTTATCAACGTGCTAAACCAATACCGTGTATTTTA
CATGGACTTTAATTAGAGGATTGTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis