Browse Element(s) Details


OsAffx.23776.1.S1_at

Description tigr:9629.m05218
TID=OsAffx.23776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5362011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein
LOC_Os01g53600Os.53562.1.S1_s_at11/111+31101964..31106121Protein farnesyltransferase beta subunit, putative, expressed
LOC_Os01g53610Os.34170.1.S1_at11/111+31106241..31109574pentatricopeptide, putative, expressed
LOC_Os01g53620OsAffx.23776.1.S1_at11/111+31112951..31114867expressed protein
LOC_Os01g53620Os.9011.1.S1_at10/111+31112951..31114867expressed protein
LOC_Os01g53630Os.42170.1.S1_x_at10/111+31115825..31123367Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23776.1.S1_at--799--6611Chr01:31113404..31113558 (25 bp)
GTTGGCTCTCAGAAGTTGGGTTTGA
LOC_Os01g53620
OsAffx.23776.1.S1_at--905--4811Chr01:31113408..31113562 (25 bp)
GCTCTCAGAAGTTGGGTTTGATTTT
LOC_Os01g53620
OsAffx.23776.1.S1_at--1029--10771Chr01:31113555..31113579 (25 bp)
TTGATTTTGGTGCACCCATCCATCA
LOC_Os01g53620
OsAffx.23776.1.S1_at--1033--7751Chr01:31113563..31113587 (25 bp)
GGTGCACCCATCCATCATCTTAAAT
LOC_Os01g53620
OsAffx.23776.1.S1_at--824--4331Chr01:31113570..31113594 (25 bp)
CCATCCATCATCTTAAATCCACATT
LOC_Os01g53620
OsAffx.23776.1.S1_at--606--391Chr01:31113576..31113600 (25 bp)
ATCATCTTAAATCCACATTAGCCAA
LOC_Os01g53620
OsAffx.23776.1.S1_at--613--2071Chr01:31113590..31113746 (25 bp)
ACATTAGCCAAAGTGATTGGGTCAA
LOC_Os01g53620
OsAffx.23776.1.S1_at--784--11Chr01:31113737..31113761 (25 bp)
ATTGGGTCAAAGATTGTAGTTCAAC
LOC_Os01g53620
OsAffx.23776.1.S1_at--294--2771Chr01:31113746..31113770 (25 bp)
AAGATTGTAGTTCAACTTTTACATA
LOC_Os01g53620
OsAffx.23776.1.S1_at--471--3671Chr01:31113761..31113785 (25 bp)
CTTTTACATATTTTCCTATCTTTAG
LOC_Os01g53620
OsAffx.23776.1.S1_at--221--10371Chr01:31113771..31113795 (25 bp)
TTTTCCTATCTTTAGTTACTGATGC
LOC_Os01g53620
Target Sequence 
GTTGGCTCTCAGAAGTTGGGTTTGATTTTGGTGCACCCATCCATCATCTTAAATCCACATTAGCCAAAGTGATTGGGTCA
AAGATTGTAGTTCAACTTTTACATATTTTCCTATCTTTAGTTACTGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis