Browse Element(s) Details


Os.32371.1.S1_at

Description gb:AK099546.1
DB_XREF= gi:32984755
TID=Os.32371.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0021A09.3 (OSJNBb0021A09.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033B12, full insert sequence.
FL= gb:AK105189.1 gb:AK099546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5350011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53440OsAffx.11587.1.S1_at11/111+31035128..31035529hypothetical protein
LOC_Os01g53460Os.25227.2.S1_at11/111+31039021..31040692UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53450Os.25227.1.S1_x_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.25227.1.S1_s_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_s_at6/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53470Os.28576.1.S1_at11/111+31045778..31046800Harpin-induced protein 1 containing protein, expressed
LOC_Os01g53480NANA1+31047595..31050103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53500Os.32371.1.S1_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53500Os.32371.2.S1_x_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed
LOC_Os01g53530OsAffx.11588.1.S1_at11/111+31072286..31072719hypothetical protein
LOC_Os01g53530Os.38764.1.S1_x_at8/111+31072286..31072719hypothetical protein
LOC_Os01g53540OsAffx.23775.1.S1_at11/111+31074365..31074583hypothetical protein
LOC_Os01g53550Os.30828.1.S1_at7/111+31075148..31076022expressed protein
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32371.1.S1_at--527--3471Chr01:31057475..31057499 (25 bp)
CAGGTGACGGACACATTGGTGCAAT
LOC_Os01g53500
Os.32371.1.S1_at--207--31Chr01:31057461..31057485 (25 bp)
ATTGGTGCAATTCGGTGCTCTTAAA
LOC_Os01g53500
Os.32371.1.S1_at--704--3951Chr01:31057449..31057473 (25 bp)
CGGTGCTCTTAAAAACTGGAGTACT
LOC_Os01g53500
Os.32371.1.S1_at--1068--1171Chr01:31057430..31057454 (25 bp)
AGTACTACTATATTGCTCTTCTTTT
LOC_Os01g53500
Os.32371.1.S1_at--526--2831Chr01:31057375..31057399 (25 bp)
AAGTTTATGTATTGCTTGATTGGTC
LOC_Os01g53500
Os.32371.1.S1_at--567--10711Chr01:31057364..31057388 (25 bp)
TTGCTTGATTGGTCAGGCGGGCTTT
LOC_Os01g53500
Os.32371.1.S1_at--871--7671Chr01:31057319..31057343 (25 bp)
GGGTTGTGCTTAGGTTATTTAGAGA
LOC_Os01g53500
Os.32371.1.S1_at--170--7131Chr01:31057248..31057272 (25 bp)
GTCATCTAGAAGTACATGTCTTGAG
LOC_Os01g53500
Os.32371.1.S1_at--242--3571Chr01:31057208..31057232 (25 bp)
CATACATTGTGTTTGTTTCTGTGGC
LOC_Os01g53500
Os.32371.1.S1_at--468--8771Chr01:31057199..31057223 (25 bp)
TGTTTGTTTCTGTGGCAGAGTTCCT
LOC_Os01g53500
Os.32371.1.S1_at--835--111Chr01:31057168..31057192 (25 bp)
ATTCTAATGTATAATTTCCGTTGCT
LOC_Os01g53500
Target Sequence 
CAGGTGACGGACACATTGGTGCAATTCGGTGCTCTTAAAAACTGGAGTACTACTATATTGCTCTTCTTTTTTTTATCCTT
TTACGTTTATTAAGGATGTAAAGTTTATGTATTGCTTGATTGGTCAGGCGGGCTTTAGGGGAGGTTTGACTGTAGGGGGT
TGTGCTTAGGTTATTTAGAGAAGGTAATTGTTTGTTTGATATTACTATATTACTTCGAGCAAATTTTGTCATCTAGAAGT
ACATGTCTTGAGTAAGGAATAGTTGTACATACATTGTGTTTGTTTCTGTGGCAGAGTTCCTCNNNATGATATTCTAATGT
ATAATTTCCGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis