Browse Element(s) Details


Os.25227.2.S1_at

Description gb:AK100519.1
DB_XREF= gi:32985728
TID=Os.25227.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative flavonol glucosyltransferase (B1060H01.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100J15, full insert sequence.
FL= gb:AK100519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5346011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53420Os.5225.1.S1_at11/111+31016698..31018300UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53430Os.33722.1.S1_at11/111+31021784..31023538UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53440OsAffx.11587.1.S1_at11/111+31035128..31035529hypothetical protein
LOC_Os01g53460Os.25227.2.S1_at11/111+31039021..31040692UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53450Os.25227.1.S1_x_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.25227.1.S1_s_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_s_at6/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53470Os.28576.1.S1_at11/111+31045778..31046800Harpin-induced protein 1 containing protein, expressed
LOC_Os01g53480NANA1+31047595..31050103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53500Os.32371.1.S1_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53500Os.32371.2.S1_x_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25227.2.S1_at--39--891Chr01:31039540..31039564 (25 bp)
AGGCCAAGGTGCTACGCCACGCGGC
LOC_Os01g53460
Os.25227.2.S1_at--55--9351Chr01:31039220..31039244 (25 bp)
TCGCGTGTGGCGTTTGACGAGTTTA
LOC_Os01g53460
Os.25227.2.S1_at--1069--10151Chr01:31039198..31039222 (25 bp)
TTATCGATCGTTTGGTGACGTCCGA
LOC_Os01g53460
Os.25227.2.S1_at--47--10851Chr01:31039187..31039211 (25 bp)
TTGGTGACGTCCGAGTGATCAATCA
LOC_Os01g53460
Os.25227.2.S1_at--1130--8831Chr01:31039172..31039196 (25 bp)
TGATCAATCACTCATCGTTCGGCAT
LOC_Os01g53460
Os.25227.2.S1_at--824--511Chr01:31039159..31039183 (25 bp)
ATCGTTCGGCATTTGGGCGCTTAGC
LOC_Os01g53460
Os.25227.2.S1_at--42--4891Chr01:31039141..31039165 (25 bp)
GCTTAGCTTACCTTGTTTCCTAGAG
LOC_Os01g53460
Os.25227.2.S1_at--1007--1731Chr01:31039132..31039156 (25 bp)
ACCTTGTTTCCTAGAGGACCTGAGA
LOC_Os01g53460
Os.25227.2.S1_at--951--591Chr01:31039102..31039126 (25 bp)
ATGCGGTTCGTGTTAGCGGACGACC
LOC_Os01g53460
Os.25227.2.S1_at--898--1771Chr01:31039080..31039104 (25 bp)
ACCGTGTTGGACTTGCACTCTGTGT
LOC_Os01g53460
Os.25227.2.S1_at--398--3831Chr01:31039042..31039066 (25 bp)
CTGCCCCGTTCATTCACAAATAAAA
LOC_Os01g53460
Target Sequence 
AGGCCAAGGTGCTACGCCACGCGGCGACGGCCGCGTTCGTCACGCACTGCGGGTGGAACTCGACGCTGGAGGGGATCACG
GCGGGGGTGCCGCTGCTGTGCTGGCCGCTGTACGCGGAGCAGAGGATGAACAAGGTGTTCATCGTGGAGGAGATGAAGGT
GGGCGTGGTGATCGATGGCTACGACGAGGAGATGGTGAGCGCGGAGGAGGTGGAGGCGAAGGTGAGGCTGGTGATGGAGT
CGGAGGAAGGGGGGAAGCTACTGGAGAGGCTGGCCGTGGCGAGGGCGAAGGCCGTGGAGGCGCTCGCGGAAGAAGGGCCC
TCGCGTGTGGCGTTTGACGAGTTTATCGATCGTTTGGTGACGTCCGAGTGATCAATCACTCATCGTTCGGCATTTGGGCG
CTTAGCTTACCTTGTTTCCTAGAGGACCTGAGAAGATGATGCGGTTCGTGTTAGCGGACGACCGTGTTGGACTTGCACTC
TGTGTGCTCCTGCGCCTTCTGCCCCGTTCATTCACAAATAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25227.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis