Browse Element(s) Details


Os.28576.1.S1_at

Description gb:AK111351.1
DB_XREF= gi:32996560
TID=Os.28576.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1060H01.30 (B1060H01.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G07, full insert sequence.
FL= gb:AK111351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5347011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53430Os.33722.1.S1_at11/111+31021784..31023538UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53440OsAffx.11587.1.S1_at11/111+31035128..31035529hypothetical protein
LOC_Os01g53460Os.25227.2.S1_at11/111+31039021..31040692UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53450Os.25227.1.S1_x_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.25227.1.S1_s_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_s_at6/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53470Os.28576.1.S1_at11/111+31045778..31046800Harpin-induced protein 1 containing protein, expressed
LOC_Os01g53480NANA1+31047595..31050103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53500Os.32371.1.S1_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53500Os.32371.2.S1_x_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53520Os.4947.1.S1_at11/111+31065548..31067572reticulon family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28576.1.S1_at--895--9391Chr01:31046269..31046293 (25 bp)
TCGTTCCGGTTCGACCGCAGCGAGA
LOC_Os01g53470
Os.28576.1.S1_at--902--1631Chr01:31046287..31046311 (25 bp)
AGCGAGACGGACTTCTACTACGCCG
LOC_Os01g53470
Os.28576.1.S1_at--735--1491Chr01:31046362..31046386 (25 bp)
AGCACCGTGCGGATGAACGTCACGC
LOC_Os01g53470
Os.28576.1.S1_at--632--9671Chr01:31046459..31046483 (25 bp)
TCACCAGCTACACGGAGATCAGCGG
LOC_Os01g53470
Os.28576.1.S1_at--391--2791Chr01:31046509..31046533 (25 bp)
AAGAGGAACCTCGACATCAAGATGA
LOC_Os01g53470
Os.28576.1.S1_at--798--371Chr01:31046524..31046548 (25 bp)
ATCAAGATGAACTGCTCCATCACGC
LOC_Os01g53470
Os.28576.1.S1_at--1038--3871Chr01:31046563..31046587 (25 bp)
CTGTCCACCGTGCAGAGCAAGAGCA
LOC_Os01g53470
Os.28576.1.S1_at--793--2771Chr01:31046581..31046605 (25 bp)
AAGAGCACGAACTGTGTCGCCAGCG
LOC_Os01g53470
Os.28576.1.S1_at--443--2571Chr01:31046590..31046614 (25 bp)
AACTGTGTCGCCAGCGTCAGCTGAT
LOC_Os01g53470
Os.28576.1.S1_at--852--9211Chr01:31046647..31046671 (25 bp)
TCCATCGATCGTGTTCTATAATTAT
LOC_Os01g53470
Os.28576.1.S1_at--1026--6491Chr01:31046688..31046712 (25 bp)
GATATTTTCGTGTCACTTAGATTTA
LOC_Os01g53470
Target Sequence 
TCGTTCCGGTTCGACCGCAGCGAGACGGACTTCTACTACGCCGGGGAGACCGTCGGCGTGGCGTACGCGCCCGAAGGCGA
GGTCGGCGCCGACAGCACCGTGCGGATGAACGTCACGCTCGACGTGCTCGCCGACCGCATCTCCCCCAACGTCAACGCCA
CCGACCTCATCTTCGGCCAGGGCTACAACCTCACCAGCTACACGGAGATCAGCGGGAGGGTGAACGTGCTGGGGATCTAC
AAGAGGAACCTCGACATCAAGATGAACTGCTCCATCACGCTGGAGGTCAGCGCCCTGTCCACCGTGCAGAGCAAGAGCAC
GAACTGTGTCGCCAGCGTCAGCTGATCGCTCGCTCGCTCGCGAGATGGGATTTGGGGATCCATCGATCGTGTTCTATAAT
TATAATCTCTTGGTGGNCTGATATTTTCGTGTCACTTAGATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis