Browse Element(s) Details


OsAffx.11587.1.S1_at

Description tigr:9629.m05199
TID=OsAffx.11587.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5344011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53420Os.5225.1.S1_at11/111+31016698..31018300UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53430Os.33722.1.S1_at11/111+31021784..31023538UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53440OsAffx.11587.1.S1_at11/111+31035128..31035529hypothetical protein
LOC_Os01g53460Os.25227.2.S1_at11/111+31039021..31040692UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53450Os.25227.1.S1_x_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.25227.1.S1_s_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_s_at6/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53470Os.28576.1.S1_at11/111+31045778..31046800Harpin-induced protein 1 containing protein, expressed
LOC_Os01g53480NANA1+31047595..31050103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53500Os.32371.1.S1_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53500Os.32371.2.S1_x_at11/111+31057165..31058185Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11587.1.S1_at--310--1391Chr01:31035196..31035220 (25 bp)
AGACCCGCCGGAGCTAGAGCCAGAG
LOC_Os01g53440
OsAffx.11587.1.S1_at--1108--10011Chr01:31035210..31035234 (25 bp)
TAGAGCCAGAGCCATCACTTAGCCT
LOC_Os01g53440
OsAffx.11587.1.S1_at--481--1691Chr01:31035267..31035291 (25 bp)
AGCCAGACATCACCAAACACGAGAA
LOC_Os01g53440
OsAffx.11587.1.S1_at--572--5971Chr01:31035287..31035311 (25 bp)
GAGAAGCCCACAACGACGTGCACAT
LOC_Os01g53440
OsAffx.11587.1.S1_at--663--2611Chr01:31035317..31035341 (25 bp)
AACCCCATGTCAACAACCGTGATGC
LOC_Os01g53440
OsAffx.11587.1.S1_at--64--8251Chr01:31035362..31035386 (25 bp)
GGCACAGACACAAGTGACCACCACG
LOC_Os01g53440
OsAffx.11587.1.S1_at--1024--1971Chr01:31035395..31035419 (25 bp)
ACTGCCTCTGTCTTCAATGGGCTAG
LOC_Os01g53440
OsAffx.11587.1.S1_at--59--811Chr01:31035411..31035435 (25 bp)
ATGGGCTAGGCCGTACCTCAAGCAG
LOC_Os01g53440
OsAffx.11587.1.S1_at--7--6991Chr01:31035423..31035447 (25 bp)
GTACCTCAAGCAGTCCAAGCAACGT
LOC_Os01g53440
OsAffx.11587.1.S1_at--925--1891Chr01:31035444..31035468 (25 bp)
ACGTCGCCGACGGTTGCTGCCATGG
LOC_Os01g53440
OsAffx.11587.1.S1_at--521--8651Chr01:31035466..31035490 (25 bp)
TGGGCTCGGGCTCCACCAAGCTCGA
LOC_Os01g53440
Target Sequence 
AGACCCGCCGGAGCTAGAGCCAGAGCCATCACTTAGCCTCCTGCTCCTCCGTGAGTTCGTCCCCGCCGACGAGCCAGACA
TCACCAAACACGAGAAGCCCACAACGACGTGCACATCCACCAACCCCATGTCAACAACCGTGATGCCGCCATCGCTCACC
GCCACAGGCACAGACACAAGTGACCACCACGCCACCGCCACTGCCTCTGTCTTCAATGGGCTAGGCCGTACCTCAAGCAG
TCCAAGCAACGTCGCCGACGGTTGCTGCCATGGGCTCGGGCTCCACCAAGCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis