Browse Element(s) Details


Os.5225.1.S1_at

Description gb:AK107156.1
DB_XREF= gi:32992365
TID=Os.5225.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative flavonol glucosyltransferase (B1060H01.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-E08, full insert sequence.
FL= gb:AK107156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5342011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53370Os.31669.1.S1_x_at10/111+30993490..30995132Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53370Os.31669.1.S1_at9/111+30993490..30995132Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53380Os.31669.1.S1_at5/111+30998380..30998841Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os01g53380Os.31669.1.S1_x_at3/111+30998380..30998841Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os01g53390Os.17437.1.S1_at11/111+31002321..31004269Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53390Os.31669.1.S1_x_at1/111+31002321..31004269Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53399NANA1+31004624..31004914NA
LOC_Os01g53408OsAffx.21569.1.S1_at9/111+31005568..31006121NA
LOC_Os01g53420Os.5225.1.S1_at11/111+31016698..31018300UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53430Os.33722.1.S1_at11/111+31021784..31023538UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53440OsAffx.11587.1.S1_at11/111+31035128..31035529hypothetical protein
LOC_Os01g53460Os.25227.2.S1_at11/111+31039021..31040692UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53450Os.25227.1.S1_x_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.25227.1.S1_s_at11/111+31039261..31044535aminotransferase, classes I and II family protein, expressed
LOC_Os01g53450Os.41946.1.S1_s_at6/111+31039261..31044535aminotransferase, classes I and II family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5225.1.S1_at--316--9191Chr01:31017113..31017137 (25 bp)
TGCCTATGGTTTGCTGGCCGATGTA
LOC_Os01g53420
Os.5225.1.S1_at--107--3711Chr01:31017110..31017134 (25 bp)
CTATGGTTTGCTGGCCGATGTACGC
LOC_Os01g53420
Os.5225.1.S1_at--135--7771Chr01:31017034..31017058 (25 bp)
GGTGATGGATGGCTATGACGACGAC
LOC_Os01g53420
Os.5225.1.S1_at--671--6091Chr01:31016961..31016985 (25 bp)
GAGTCAGAGCAAGGGAAGCAGATCA
LOC_Os01g53420
Os.5225.1.S1_at--883--8371Chr01:31016926..31016950 (25 bp)
GGCGTTGGCGAAACAGATGGCCACT
LOC_Os01g53420
Os.5225.1.S1_at--1158--2131Chr01:31016914..31016938 (25 bp)
ACAGATGGCCACTCGCGCGATGGAG
LOC_Os01g53420
Os.5225.1.S1_at--402--10331Chr01:31016856..31016880 (25 bp)
TTTCTTGGCGGCCTGAAGATAGCGA
LOC_Os01g53420
Os.5225.1.S1_at--488--4711Chr01:31016849..31016873 (25 bp)
GCGGCCTGAAGATAGCGATGGACAA
LOC_Os01g53420
Os.5225.1.S1_at--1034--8131Chr01:31016824..31016848 (25 bp)
GGACAATTGATTTGGTCAACAAAAA
LOC_Os01g53420
Os.5225.1.S1_at--230--7031Chr01:31016754..31016778 (25 bp)
GTACAGCTTAAAAACATCGATGTCT
LOC_Os01g53420
Os.5225.1.S1_at--596--2391Chr01:31016743..31016767 (25 bp)
AAACATCGATGTCTGATCTTTGTAT
LOC_Os01g53420
Target Sequence 
TGCCTATGGTTTGCTGGCCGATGTACGCGGNAGCAGAGGANTGAACAAGGTGTTCGTCGTGGAGGAGATGAAGCTTGGGG
TGGTGATGGATGGCTATGACGACGACGGGGTGGTGAAGGCGGAGGAGGTGGAGACCAAGGTGAGGCTGGTGATGGAGTCA
GAGCAAGGGAAGCAGATCAGGGAGAGGATGGCGTTGGCGAAACAGATGGCCACTCGCGCGATGGAGATCGGCGGATCGTC
GACGGCGTCATTCNCTGACTTTCTTGGCGGCCTGAAGATAGCGATGGACAAGGACAATTGATTTGGTCAACAAAAAATCG
CGAAGCGATATGGAGTNCTCCTTTTNTTTATTTTAGGGGATGTACAGCTTAAAAACATCGATGTCTGATCTTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis