Browse Element(s) Details


Os.17437.1.S1_at

Description gb:AK108266.1
DB_XREF= gi:32993475
TID=Os.17437.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B10, full insert sequence.
FL= gb:AK108266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5339011/11Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53350Os.10597.1.S1_at11/111+30982154..30984015UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53360NANA1+30984255..30984728hypothetical protein
LOC_Os01g53370Os.31669.1.S1_x_at10/111+30993490..30995132Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53370Os.31669.1.S1_at9/111+30993490..30995132Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53380Os.31669.1.S1_at5/111+30998380..30998841Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os01g53380Os.31669.1.S1_x_at3/111+30998380..30998841Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os01g53390Os.17437.1.S1_at11/111+31002321..31004269Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53390Os.31669.1.S1_x_at1/111+31002321..31004269Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53399NANA1+31004624..31004914NA
LOC_Os01g53408OsAffx.21569.1.S1_at9/111+31005568..31006121NA
LOC_Os01g53420Os.5225.1.S1_at11/111+31016698..31018300UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53430Os.33722.1.S1_at11/111+31021784..31023538UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17437.1.S1_at--369--10111Chr01:31003821..31003845 (25 bp)
TATGACAAAGGAATCGTTACGGCGG
LOC_Os01g53390
Os.17437.1.S1_at--595--8491Chr01:31003869..31003893 (25 bp)
TGGCTCATGGATTCTGACGGTGGAA
LOC_Os01g53390
Os.17437.1.S1_at--920--1031Chr01:31003955..31003979 (25 bp)
AGGTGAGTCCAAAATGACGTTGTTA
LOC_Os01g53390
Os.17437.1.S1_at--174--5691Chr01:31003970..31003994 (25 bp)
GACGTTGTTAGAACTCGTAAGCCAG
LOC_Os01g53390
Os.17437.1.S1_at--274--731Chr01:31004038..31004062 (25 bp)
ATGTTAACGGGCTAGCCTTCTGCAC
LOC_Os01g53390
Os.17437.1.S1_at--995--3611Chr01:31004054..31004078 (25 bp)
CTTCTGCACCGTTTGGTCCAAAATA
LOC_Os01g53390
Os.17437.1.S1_at--674--7131Chr01:31004089..31004113 (25 bp)
GTCATACTATAGTATATTTCCGCCA
LOC_Os01g53390
Os.17437.1.S1_at--1131--351Chr01:31004179..31004203 (25 bp)
ATCAATGTTGTAGCTTAGACTAGAG
LOC_Os01g53390
Os.17437.1.S1_at--199--1331Chr01:31004200..31004224 (25 bp)
AGAGGTAACACAATATTTTCAACAT
LOC_Os01g53390
Os.17437.1.S1_at--511--8691Chr01:31004217..31004241 (25 bp)
TTCAACATTTAACCGGGTAAGCTTG
LOC_Os01g53390
Os.17437.1.S1_at--124--2911Chr01:31004245..31004269 (25 bp)
AAGGTTTCTGCTTACACGGGTGGAG
LOC_Os01g53390
Target Sequence 
TATGACAAAGGAATCGTTACGGCGGAGGAGATTCAGGAGAAGGCGAGGTGGCTCATGGATTCTGACGGTGGAAGAGAGCT
CCGGGAGCGGACTTTGGCGGCCATGCGAGAGGTGAAAGAGGCGCCAAGTGACAAAGGTGAGTCCAAAATGACGTTGTTAG
AACTCGTAAGCCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGTTAACGGGCTAGCCTTCTGC
ACCGTTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCANAGTAGTAAAAATCCTTGTAGAATATT
TAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCA
ACATTTAACCGGGTAAGCTTGCAAAAGGTTTCTGCTTACACGGGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis