Browse Element(s) Details


Os.10597.1.S1_at

Description gb:AK102415.1
DB_XREF= gi:32987624
TID=Os.10597.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative flavonol glucosyltransferase (B1060H01.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093B13, full insert sequence.
FL= gb:AK061830.1 gb:AK102415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5335011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53294Os.3427.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.2323.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_at10/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_x_at9/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_x_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.3.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_x_at2/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.4.S1_x_at1/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294Os.4760.1.S1_at1/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53310OsAffx.23773.1.S1_at8/111+30961491..30963995hypothetical protein
LOC_Os01g53320OsAffx.29313.1.S1_at1/111+30967607..30969952transposon protein, putative, Mutator sub-class
LOC_Os01g53330Os.32721.1.S1_at11/111+30974360..30976190UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53340NANA1+30976767..30977096hypothetical protein
LOC_Os01g53350Os.10597.1.S1_at11/111+30982154..30984015UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53360NANA1+30984255..30984728hypothetical protein
LOC_Os01g53370Os.31669.1.S1_x_at10/111+30993490..30995132Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53370Os.31669.1.S1_at9/111+30993490..30995132Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53380Os.31669.1.S1_at5/111+30998380..30998841Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os01g53380Os.31669.1.S1_x_at3/111+30998380..30998841Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os01g53390Os.17437.1.S1_at11/111+31002321..31004269Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53390Os.31669.1.S1_x_at1/111+31002321..31004269Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53399NANA1+31004624..31004914NA
LOC_Os01g53408OsAffx.21569.1.S1_at9/111+31005568..31006121NA

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10597.1.S1_at--821--2451Chr01:30983450..30983474 (25 bp)
AACAAGGTGTTCATGACGGCGGAGA
LOC_Os01g53350
Os.10597.1.S1_at--1055--2871Chr01:30983568..30983592 (25 bp)
AAGGGAAGCAGCTCAGGGCTCGTTC
LOC_Os01g53350
Os.10597.1.S1_at--221--3451Chr01:30983660..30983684 (25 bp)
CAGTTCCTGTCCGATGTGGAGAATC
LOC_Os01g53350
Os.10597.1.S1_at--1101--8051Chr01:30983677..30983701 (25 bp)
GGAGAATCTTGTCCAGAACTAACTG
LOC_Os01g53350
Os.10597.1.S1_at--983--7551Chr01:30983781..30983805 (25 bp)
GGGCCCTTTCAACGATAATCATTTA
LOC_Os01g53350
Os.10597.1.S1_at--901--5471Chr01:30983807..30983831 (25 bp)
GAACTACTTGTGTACCTTATTTGTT
LOC_Os01g53350
Os.10597.1.S1_at--331--1491Chr01:30983840..30983864 (25 bp)
AGCAACGTACTAGAATGGCCGCGAT
LOC_Os01g53350
Os.10597.1.S1_at--755--8411Chr01:30983856..30983880 (25 bp)
GGCCGCGATGATATTTATCCCTTGT
LOC_Os01g53350
Os.10597.1.S1_at--515--10431Chr01:30983870..30983894 (25 bp)
TTATCCCTTGTCTTTATTATCAGAG
LOC_Os01g53350
Os.10597.1.S1_at--941--10171Chr01:30983936..30983960 (25 bp)
TATAATTAGTTTCCACCTCTGTCTC
LOC_Os01g53350
Os.10597.1.S1_at--589--4351Chr01:30983948..30983972 (25 bp)
CCACCTCTGTCTCTCTAATTTTAAT
LOC_Os01g53350
Target Sequence 
AACAAGGTGTTCATGACGGCGGAGATGGGCGTCGGGGTGGAGCTGGACGGGTACAACTCGGACTTTGTCAAAGCGGAGGA
GTTGGAGGCCAAGGTGAGGCTGGTGATGGAGTCGGAGGAAGGGAAGCAGCTCAGGGCTCGTTCGGCTGCGCGGAAGAAGG
AGGCAGAGGCGGCGCTGGAGGAAGGGGGCTCGTCGCACGCTGCGTTCGTCCAGTTCCTGTCCGATGTGGAGAATCTTGTC
CAGAACTAACTGACGAAAATTTGCAGATGCCCAGCANNNNNNNNTCTTGGCCACAAGTGACGAAAATTCTCAGATGCTCT
TTATTTGCCTGGGGACCGGGGGCCCTTTCAACGATAATCATTTAAGAACTACTTGTGTACCTTATTTGTTGTTAATAAAG
CAACGTACTAGAATGGCCGCGATGATATTTATCCCTTGTCTTTATTATCAGAGTATATGGATAAAATCTAATTGTATGGT
TTGTTATGGTAGAATATAATTAGTTTCCACCTCTGTCTCTCTAATTTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis