Browse Element(s) Details


Os.3427.1.S1_at

Description gb:AK103747.1
DB_XREF= gi:32988956
TID=Os.3427.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cytochrome b245 beta chain homolog rbohA (OSJNBb0036G09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138P16, full insert sequence.
FL= gb:AK103747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5329411/11NADPH oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53250Os.17257.1.S1_x_at11/111+30920349..30925365FAD binding domain containing protein, expressed
LOC_Os01g53260Os.30386.1.S1_at11/111+30931143..30934925WRKY transcription factor 45, putative, expressed
LOC_Os01g53280OsAffx.11584.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53280Os.36029.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53294Os.3427.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.2323.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_at10/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_x_at9/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_x_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.3.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_x_at2/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.4.S1_x_at1/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294Os.4760.1.S1_at1/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53310OsAffx.23773.1.S1_at8/111+30961491..30963995hypothetical protein
LOC_Os01g53320OsAffx.29313.1.S1_at1/111+30967607..30969952transposon protein, putative, Mutator sub-class
LOC_Os01g53330Os.32721.1.S1_at11/111+30974360..30976190UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53340NANA1+30976767..30977096hypothetical protein
LOC_Os01g53350Os.10597.1.S1_at11/111+30982154..30984015UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53360NANA1+30984255..30984728hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3427.1.S1_at--274--4951Chr01:30960761..30960785 (25 bp)
GCATTTTTGTCTTCGTATATTCTTC
LOC_Os01g53294
Os.3427.1.S1_at--1010--5371Chr01:30960816..30960840 (25 bp)
GAAGCAAGCATATAGTTAGCCCAAC
LOC_Os01g53294
Os.3427.1.S1_at--593--10451Chr01:30960831..30960855 (25 bp)
TTAGCCCAACAGTTCTTGCTACCAA
LOC_Os01g53294
Os.3427.1.S1_at--769--10811Chr01:30960904..30960928 (25 bp)
TTGTGCGATGTCCATCATGGCTTTT
LOC_Os01g53294
Os.3427.1.S1_at--1011--851Chr01:30960920..30960944 (25 bp)
ATGGCTTTTGCAGCATGTCTTATGC
LOC_Os01g53294
Os.3427.1.S1_at--648--7071Chr01:30960946..30960970 (25 bp)
GTCATGAATGTACAGAGCTCACTTG
LOC_Os01g53294
Os.3427.1.S1_at--194--5851Chr01:30960973..30960997 (25 bp)
GACCTTGAGCTTCTTCTGATTTTAG
LOC_Os01g53294
Os.3427.1.S1_at--206--131Chr01:30961061..30961085 (25 bp)
ATTCATGCAGCTGAGTGTCTGGCTA
LOC_Os01g53294
Os.3427.1.S1_at--711--8311Chr01:30961081..30961105 (25 bp)
GGCTAAGGCCAGAAGCACGTTTTAC
LOC_Os01g53294
Os.3427.1.S1_at--112--7331Chr01:30961198..30961222 (25 bp)
GTGCATTGGCAGTTTTATTGGCTCC
LOC_Os01g53294
Os.3427.1.S1_at--960--10231Chr01:30961213..30961237 (25 bp)
TATTGGCTCCAGGTTGGGCGCACCG
LOC_Os01g53294
Target Sequence 
GCATTTTTGTCTTCGTATATTCTTCATTATAATGGACAGGAGATAGCAAGGTGAGGAAGCAAGCATATAGTTAGCCCAAC
AGTTCTTGCTACCAATCAATAAAAGGAGCAACAACAAGAGTGATTTGGGATAATCATATAAATTTGTGCGATGTCCATCA
TGGCTTTTGCAGCATGTCTTATGCAGTCATGAATGTACAGAGCTCACTTGAAGACCTTGAGCTTCTTCTGATTTTAGTTG
AGATTATAAGTAGGATGGTATAGCACATAGGAAGGTCACAAGGCTAATTAACTGTATATTATTCATGCAGCTGAGTGTCT
GGCTAAGGCCAGAAGCACGTTTTACTTTTGTATTTATACATAACAGAAAACGAGAAAAAAAAAGTGAAAAGGGAAAGGTA
TACTCGAATTGAGTGTTTGTAATCTGTAATTTATACAGTGCATTGGCAGTTTTATTGGCTCCAGGTTGGGCGCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis