Browse Element(s) Details


OsAffx.23773.1.S1_at

Description tigr:9629.m05185
TID=OsAffx.23773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g533108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53280OsAffx.11584.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53280Os.36029.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53294Os.3427.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.2323.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_at10/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_x_at9/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_x_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.3.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_x_at2/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.4.S1_x_at1/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294Os.4760.1.S1_at1/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53310OsAffx.23773.1.S1_at8/111+30961491..30963995hypothetical protein
LOC_Os01g53320OsAffx.29313.1.S1_at1/111+30967607..30969952transposon protein, putative, Mutator sub-class
LOC_Os01g53330Os.32721.1.S1_at11/111+30974360..30976190UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53340NANA1+30976767..30977096hypothetical protein
LOC_Os01g53350Os.10597.1.S1_at11/111+30982154..30984015UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53360NANA1+30984255..30984728hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23773.1.S1_at--164--7551Chr01:30961521..30961545 (25 bp)
GGGCGAAGCTACAGCAAAGCGTTGG
LOC_Os01g53310
OsAffx.23773.1.S1_at--625--3078Chr07:10078892..10078916 (25 bp)
CAGTAGACCCCGACGATTTTCCACA
NONE
OsAffx.23773.1.S1_at--966--5693Chr07:10078903..10078927 (25 bp)
GACGATTTTCCACAACCATCGTATA
NONE
OsAffx.23773.1.S1_at--537--6532Chr07:10078906..10078930 (25 bp)
GATTTTCCACAACCATCGTATACCC
NONE
OsAffx.23773.1.S1_at--208--2272Chr07:10078913..10078937 (25 bp)
CACAACCATCGTATACCCCGTTTAT
NONE
OsAffx.23773.1.S1_at--1150--9192Chr07:10078921..10078945 (25 bp)
TCGTATACCCCGTTTATCTTACCAG
NONE
OsAffx.23773.1.S1_at--7--292Chr07:10078925..10078949 (25 bp)
ATACCCCGTTTATCTTACCAGCCAT
NONE
OsAffx.23773.1.S1_at--806--6813Chr07:10078932..10078979 (25 bp)
GTTTATCTTACCAGCCATGACCCCG
NONE
OsAffx.23773.1.S1_at--433--4431NONE
GCCATGACCCCGACTGTAAGTGGTG
NONE
OsAffx.23773.1.S1_at--811--8931NONE
TGACCCCGACTGTAAGTGGTGATGA
NONE
OsAffx.23773.1.S1_at--1064--6051NONE
GAGTTGAACTGGGTTGATAGAACAA
NONE
Target Sequence 
GGGCGAAGCTACAGCAAAGCGTTGGGGTCAGTAGACCCCGACGATTTTCCACAACCATCGTATACCCCGTTTATCTTACC
AGCCATGACCCCGACTGTAAGTGGTGATGAGTTGAACTGGGTTGATAGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis