Browse Element(s) Details


Os.30386.1.S1_at

Description gb:AY341845.1
DB_XREF= gi:33519177
TID=Os.30386.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30386 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds.
PROD=WRKY4
FL= gb:AY341845.1 gb:AK108909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5326011/11WRKY transcription factor 45, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53220Os.35681.1.S1_at11/111+30909333..30910542HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g53230OsAffx.23771.1.S1_at1/111+30911948..30912271hypothetical protein
LOC_Os01g53240Os.8061.1.S1_at11/111+30916707..30919383RD22, putative, expressed
LOC_Os01g53250Os.17257.1.S1_x_at11/111+30920349..30925365FAD binding domain containing protein, expressed
LOC_Os01g53260Os.30386.1.S1_at11/111+30931143..30934925WRKY transcription factor 45, putative, expressed
LOC_Os01g53280OsAffx.11584.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53280Os.36029.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53294Os.3427.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.2323.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_at10/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_x_at9/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_x_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.3.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_x_at2/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.4.S1_x_at1/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294Os.4760.1.S1_at1/111+30949519..30961252NADPH oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30386.1.S1_at--372--2591Chr01:30931559..30931583 (25 bp)
AACGATCACGGCGATCTGCAGGCGG
LOC_Os01g53260
Os.30386.1.S1_at--499--5471Chr01:30931762..30932147 (25 bp)
GAACAGCAAGCACCCCAGGAGCTAC
LOC_Os01g53260
Os.30386.1.S1_at--775--4111Chr01:30934425..30934449 (25 bp)
CGCACCACACGTGCAACGTGAAGAA
LOC_Os01g53260
Os.30386.1.S1_at--984--3331Chr01:30934474..30934498 (25 bp)
CACGAGCATCGTGGTGACTACGTAC
LOC_Os01g53260
Os.30386.1.S1_at--552--8931Chr01:30934488..30934512 (25 bp)
TGACTACGTACGAGGGCGTGCACAA
LOC_Os01g53260
Os.30386.1.S1_at--539--9491Chr01:30934572..30934596 (25 bp)
TCTCCCAGTTCTAATTAACGACCCA
LOC_Os01g53260
Os.30386.1.S1_at--226--9791Chr01:30934587..30934611 (25 bp)
TAACGACCCATATCGATCGGTCTCG
LOC_Os01g53260
Os.30386.1.S1_at--1004--6391Chr01:30934601..30934625 (25 bp)
GATCGGTCTCGGTCGGTCTCAAACT
LOC_Os01g53260
Os.30386.1.S1_at--523--7811Chr01:30934611..30934635 (25 bp)
GGTCGGTCTCAAACTCTGAAATGAT
LOC_Os01g53260
Os.30386.1.S1_at--561--131Chr01:30934673..30934697 (25 bp)
ATTCACGTGTACATATATACCTGCA
LOC_Os01g53260
Os.30386.1.S1_at--290--2051Chr01:30934701..30934725 (25 bp)
AATTAAACTCTCTGTTTAGCTTGGG
LOC_Os01g53260
Target Sequence 
AACGATCACGGCGATCTGCAGGCGGCCGAGAGCAGCGGGGCAGGTAACAAGGAGAAGCAGGTGATGGCGAAGGGCGGGGC
GGGGAGGCCGTCGGGGACGAAGAAGAAGGCGAGCCGGCCGCGGTTCGCGTTCCAGACGAGGAGCGACAACGACATCCTGG
ACGACGGCTACCGATGGAGGAAGTACGGGCAGAAGGCCGTCAAGAACAGCAAGCACCCCAGGAGCTACTACCGGTGCACG
CACCACACGTGCAACGTGAAGAAGCAAGTGCAGCGGCTCGCCAAGGACACGAGCATCGTGGTGACTACGTACGAGGGCGT
GCACAACCACCCCTGCGAGAAGCTCATGGAGGCCCTCACCCCCATCCTCAAGCAGCTCCAGTTCCTCTCCCAGTTCTAAT
TAACGACCCATATCGATCGGTCTCGGTCGGTCTCAAACTCTGAAATGATCGATCTTTCAAGTTNCTACACAAACACAATA
ACACACATTCACGTGTACATATATACCTGCAACAAATTAAACTCTCTGTTTAGCTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis